Polyodon spathula (Mississippi paddlefish): 121300505
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Entry
121300505 CDS
T07273
Name
(RefSeq) MHC class II transactivator-like
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pspa01001
]
121300505
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pspa04054
]
121300505
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
121300505
Protein kinases [BR:
pspa01001
]
Serine/threonine kinases: Other
TAF1 family
121300505
Pattern recognition receptors [BR:
pspa04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
121300505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
LRR_8
NPHP3_N
WHD_NOD2
NB-ARC
nSTAND_NTPase5
VapE-like_dom
DUF87
CARD
RNA_helicase
TsaE
Motif
Other DBs
NCBI-GeneID:
121300505
NCBI-ProteinID:
XP_041085007
LinkDB
All DBs
Position
26:15996344..16013664
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AA seq
1255 aa
AA seq
DB search
MVHFEEVLSRVRSSLHSVSRRGVQGMLSHLLEAGVLSRDYYLCLLKEKDAEDLARRIALP
VWEKWDFCHSTILCALDKAQSCKTKGQPALTTHDPGMEPSVLEEHSFLSLLHSDTLEGDV
PLGFPEGPFPCDAEGNQLSLDSPNIFDYLLSDLMVPNERILSPTPFEYNENIEKILKFLE
EDQQENLGEEMEMTISEPETMHQDHARSIQYHKRDLNPADANSADTMKPKRQKRDPRGKR
MLEKRKRGWRSRPDQREAQRGIPASRPGVHIDLPVEKRVASSPAHPVHGFVTFTLPISSL
AAAGNTTLTAGGSLATTPAPTAFQVIQNFTAPQQVFSIPVANAVHPGGPTFVIVPAAPMS
CPRAAGTPSSPVAGTVIDAAVARHPASPSSPASPSTVSVNRSPSPDSLPSTQPTTTDAAT
SPCRGSLQSLKTPAKPKSIEEFKDSLKRYLLNTCQFMCAEDELTLESLHIDVPLIQRQVK
IKTGKNANKCLEKELIIFDAAERRRAEIPRSQIFHPNGERSKDTKVMALLGKAGQGKSTF
VQKLCQDWSSGHFQQFELVFCFACKRLNLSGKRFGLRNLLFSLFATPTPANGDEIFRYIL
RNPEKVLIIFDGFDDFQDCEGLLHSPATSSSKEMYSIKDLFSGLFQKKLLIGSTVLVTAR
PKEAFNPFLGKVDKIVELSGFTPEHIELYMTRYFKGTSYCDGAWKKVQDNGFLFSLCSTP
LICRLMCFLLEHFDMNKDLPSTLTGLYCHVFYHKMHVNAYSPGPVNRQQKQNVPDLGVLA
WEGIQEHKCLLNPRDLSSEELKEFGLSSGILSPHPVSECGEEDDFGLGFAYLITQNFLGA
LHLILAKNINSKSLVKQILLEKKKKKPEEDWLDVLRRFLAGLLFQPAECSYLDCLSAKAV
VSKKDALSEYLKKIKPSDLNPNRLLELCHCVYETSNTGLVKHMVSKLPAALSFRGTPLSP
TDVFVLQHLLNKTRRAFTLDLHETGIDLRGIKQLAGQKSVTSFRASISDTISLWEHLHQT
GERGLLKDSISKFTINPFKASRISDVEDLCLLVQIYRERKLPSCDAETGPGNEIFEIPAV
EGLRKLEFALGPVYGSVGFLKLAEILPAFRWLQHLDLEALTDNKIGDRGVERLTEAFSAL
SSLETLNLSQNYIGDRGAERLAQSLPSLVSLKHLSLYSNLIGDRGAENMARALPEMKSLT
ELDVKYNKITDMGAQKLTESLKSCRWIKSLAMWNQSIPHGVLEHLKQQDSRINLL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggttcactttgaagaggtgctgtcccgcgtgaggagctcgctgcacagtgtctcccgt
cgcggggtccagggcatgctgtcacacctgctggaggctggtgtcctgtcaagggattac
tacctgtgcctgctcaaggagaaggatgctgaggacctagccaggaggatcgccctccca
gtgtgggagaaatgggacttctgccacagcaccatcctctgtgcgctggacaaagcacag
agctgcaaaaccaagggacagccagctctgaccacccatgatccaggcatggaaccctca
gtcctggaagagcacagcttcctgagcctgctgcacagcgacacactggagggggacgtt
ccactcggcttccccgagggaccctttccctgcgatgctgaaggtaaccagctctctctg
gattctcccaacattttcgactacctgctgtcagacctgatggtgcccaatgagagaatc
ctctctccgacccctttcgagtacaacgaaaacatcgaaaaaatattgaagtttttagag
gaagaccaacaagagaatttgggggaagaaatggagatgacaatttcagaaccggaaacc
atgcaccaggaccacgcaagaagcatccagtatcacaagagagacctgaacccagctgat
gccaactctgcagatacaatgaaaccgaagcgccagaaaagagatcccagaggaaagcga
atgcttgagaaaaggaagagagggtggagaagccgacccgaccagagagaagcacagaga
ggtatcccagcaagcaggcctggggtccacattgaccttcccgttgagaagagagtagcg
agttctcccgcacaccctgtccacgggtttgtcactttcacgctccccatctccagcctg
gctgccgctggaaacactacactcactgctggaggctctttggccactacccctgcaccc
acagccttccaggtgattcagaacttcaccgctcctcagcaggtcttcagtatccccgtc
gccaacgctgtacaccctgggggcccgacgtttgtgattgtgcctgctgctccaatgtcc
tgtcccagggctgcaggaactcccagctcccctgtcgcaggtactgtcattgatgctgct
gtcgccaggcaccctgccagcccttcctctcccgctagcccctctactgtgtctgtgaac
agatccccttctccagactctctccccagcacccagcccaccactaccgatgcagcaacg
tccccctgcagagggtcgcttcagtccctgaagacccctgcgaaacccaagtctattgaa
gagtttaaagactccctaaaacgttacctgctcaacacctgccagttcatgtgtgctgag
gacgaactgactctggagtctcttcacattgacgtgcccttgatccagaggcaggtcaag
atcaaaacggggaagaacgccaacaagtgtctggagaaggagctgatcatcttcgatgca
gcagagaggaggagagccgaaatcccccggagccaaatattccaccccaacggggagagg
tcgaaagacaccaaagtgatggctttgctgggaaaggctgggcagggtaaaagcacgttc
gtccagaagctttgccaggactggtccagtgggcacttccagcagtttgagttggtcttc
tgcttcgcgtgcaagaggctgaatctgtccgggaagcgattcgggttgaggaacctgctc
ttcagcctctttgcaacaccgaccccagccaacggcgatgagatcttcagatacatcctt
cgcaaccccgagaaggtcctgatcatattcgatggcttcgatgacttccaggattgtgaa
ggcctccttcattcccctgccaccagctcctccaaggagatgtacagcatcaaagacttg
ttttcaggtctttttcagaagaagctgctcatcggaagcacggtactggtcactgccaga
cccaaagaagcgttcaacccattcttgggaaaggtggacaagatagttgagctcagcggc
ttcacccctgaacacattgagctgtacatgaccagatacttcaagggcacttcatactgc
gacggcgcatggaagaaggtccaggacaacgggtttctctttagtttgtgctctaccccg
ctgatatgcaggttaatgtgcttcctcctcgaacactttgacatgaacaaagacttgccg
tccacgctcacaggactctactgccacgtgttctaccacaagatgcacgtgaatgcatac
tcgccgggtcctgtgaacaggcagcagaagcagaacgtccctgatctgggtgtcctagcc
tgggaagggattcaggagcacaagtgcctcctgaacccaagggacctgtcatccgaggag
ctgaaggagtttggtctgagcagcgggatcctgagccctcacccagtgagcgagtgcggg
gaggaggacgacttcggccttgggttcgcttatttgatcacacagaatttcctgggggct
ctgcacctgatcttggccaaaaacataaatagcaaaagcctggtgaagcagatcctcctg
gagaagaaaaagaagaagcctgaggaagactggctggacgtgctgcgcaggttcctggcg
gggctgctgtttcaacctgcagagtgttcctatctggactgcttgtctgccaaggctgta
gtatccaagaaagacgctctttctgaatacctgaagaagatcaaacccagcgatctgaac
cctaacaggctacttgagctgtgccactgtgtttatgagacgagcaacacagggcttgtg
aagcacatggtttccaaactccctgcagcgctctccttcaggggcactcctctctccccg
accgatgtgtttgtactgcagcacctcctgaacaaaaccagaagagccttcaccctggac
cttcacgagacgggcattgacctccgtggaatcaaacaactggcggggcagaagagcgtg
acgtcattcagggcttctatatcagatacaataagcctttgggagcacctgcaccagact
ggggagcgtggtcttttaaaggactccatctccaagttcactatcaaccctttcaaagcc
tcgcggatcagtgatgttgaggacctctgtctccttgtgcagatctaccgggagagaaag
ctgccttcatgtgacgcagagactgggcctggcaatgagatctttgagatcccggccgtc
gagggactccggaagctggaatttgcgcttggtcctgtttacggatctgtggggttttta
aagctggcggagatccttcctgcatttcggtggctccagcacctggatcttgaagcgctg
accgataacaaaatcggagacaggggagtggagagactgacggaggcgttctctgcttta
tcatcgctggagacgctcaacctgtcccagaactacattggagatcgaggagctgagagg
ctggcacagtctcttccttccctggtttcactgaaacatctcagcttgtacagtaatctg
attggggatcgtggagcagagaacatggccagggcactcccagaaatgaagtcgcttacc
gaactcgatgtgaaatataacaagatcacggacatgggggcgcagaagctgactgagagt
ctgaagagctgtcggtggataaaaagcttggcaatgtggaatcagtccatcccacatgga
gttttggagcacctgaaacaacaggactctagaatcaacctgctttag
DBGET
integrated database retrieval system
