Polyodon spathula (Mississippi paddlefish): 121300713
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Entry
121300713 CDS
T07273
Symbol
mgrn1a
Name
(RefSeq) probable E3 ubiquitin-protein ligase MGRN1 isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
pspa04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121300713 (mgrn1a)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121300713 (mgrn1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121300713 (mgrn1a)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121300713 (mgrn1a)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121300713 (mgrn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-RING_5
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
121300713
NCBI-ProteinID:
XP_041085369
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Position
26:complement(11925430..11943018)
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AA seq
546 aa
AA seq
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MGSMLSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENTDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDGPEEENGKPRVLYSV
EFTFDADAPVAISIYCQASEEFSNGMAVYNPRNPALVSETVYYKRGVSQQFSLPSFKMDF
SKWKEEELNFDLEKGIFPVVIRAVVDEGDEITGHAHVLLAAFEKHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTVDHDEHSSLDNIPP
GFEPISLLEALNGQRSVSAEIPSAPLYEEINFSGGLGESLPLSSMPLGTGDRAMDKGKVS
KSPDSTLRSPSSPIQEDDEEKLSAVSDAQPHPLIPSNPTSPETTPAEDSVTPNRVQRSRS
MVDILQDSSSEHSSLTKTDSDPPVEISLPGSSESTESLKSQSTNSSSQPLLSHLSSLHTE
DEQHAS
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaatgttaagccgaagaattgctggagttgaagatattgacatccaagcaaat
tctgcatacaggtatcctccgaaatcgggaaactattttgcaagtcatttcttcatggga
ggggaaaagtttgatactccacacccagagggatacctgtttggagagaacacggacctg
aatttccttgggaacagacctgtgcagtttccatatgttaccccagctccccatgaacca
gtaaagacattgaggagtttagttaacattaggaaagactcccttcgcctggtcaggtac
aaagatgattcagacggccccgaagaagagaatgggaagccaagagtcctgtacagtgtg
gagttcacctttgatgctgatgctcccgtggcaatcagcatttactgccaggcctctgag
gaattctccaatgggatggcagtatacaacccacggaaccctgccctggtctctgaaaca
gtatattacaaaagaggggtgagccagcagttttcactgccttctttcaaaatggatttc
tccaagtggaaagaggaagagctgaactttgacctggaaaaaggcattttcccagtggtg
atccgagctgtggttgatgaaggtgatgagatcacaggacatgcacatgttcttttggca
gcctttgaaaaacacgttgacggcagtttttcagtgaagcctttaaaacagaaacaaatt
gtggatcgtgtgagctacctgcttcaggaaatctatggaatagaaaacaagaacaaccag
gagacaaagccctcagatgatgagaacagtgacaacagcaatgagtgtgtggtgtgcctg
tcagacctgcgcgacaccctgatcctgccctgtcgacacctgtgtctgtgtaactcctgt
gctgacaccctgcgttaccaggccaacaactgtcccatctgcagattgcctttccgtgca
ttgcttcagatccgggctgtccgcaagaagcctggggctctgtctcctgtatccttcagc
cctgtcctagcacaaacagtggaccatgacgagcattcgagcttagacaatatcccacca
ggctttgaacctatctctctgctcgaagccctgaatggccagcgatcagtatctgcagaa
atcccctctgcccccttgtatgaagagatcaacttctctgggggtctgggggagtctctc
cccctctccagcatgcctctgggcaccggcgaccgagccatggacaagggcaaggtcagc
aagtcaccggacagcacactgcgctccccctcctccccaatccaggaagacgatgaagag
aagctgtctgcagtttctgatgcccagcctcaccctctgataccgagcaatcccacttca
ccagagaccacaccagcagaagattctgtcacaccgaacagagttcagagatcccggtcc
atggtagatattctccaagacagcagcagtgagcacagtagcctgactaagaccgacagt
gacccgccagtggagatctccctgccaggatcctccgagtcgaccgagagcctgaaaagt
cagagcacaaacagttcaagccagcctctcctctcccacctgagcagcctccataccgag
gacgagcagcatgcttcataa
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