Polyodon spathula (Mississippi paddlefish): 121300858
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Entry
121300858 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SMURF1-like
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
pspa04137
Mitophagy - animal
pspa04144
Endocytosis
pspa04340
Hedgehog signaling pathway
pspa04350
TGF-beta signaling pathway
pspa04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121300858
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121300858
04350 TGF-beta signaling pathway
121300858
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121300858
04137 Mitophagy - animal
121300858
09144 Cellular community - eukaryotes
04520 Adherens junction
121300858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121300858
04121 Ubiquitin system [BR:
pspa04121
]
121300858
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121300858
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121300858
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121300858
Autophagy
Mitophagy
Other mitophagy associated proteins
121300858
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121300858
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121300858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
DUF7350
Motif
Other DBs
NCBI-GeneID:
121300858
NCBI-ProteinID:
XP_041085734
LinkDB
All DBs
Position
26:14428610..14449880
Genome browser
AA seq
732 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK
LNPTDSDAVRGQIVVSLQTRDRIGTGGAVVDCRGLLENEGPVFEDSGPGRPLSCFTEEPL
PYTDSTGAAGGGNCRFLDSPNQEQRLQAQRLRNQDTRGHTHTPQNRPHGSQSPDLPEGYE
QRTTVQGQVYFLHTQTGVSTWHDPRIPRDLNSVSCEDLGPLPPGWEVRSTVSGRIYFVDH
NNRTTQFTDPRLHHIMSQHSQVKESGQQLPVQTEVPPEDGEGELPVRYERDLVQKLKLLR
HELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVARE
WLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRIMGLAVFHGHYI
NGGFTLPFYKQLLGKPIQLSDLETVDPELHKSLVWILENDITPVLDHTFCVEHNAFGKFL
QHELKPNGRNIPVMEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELIPQHLLKPFDHK
ELELIIGGLGKLDLNDWKANTRLKHCVADSNMVKWFWQAVESFDEERRGRLLQFVTGSTR
VPLQGFKALQGATMSSGPWVFTDPSRLATNTDNLPKXHTCFNRIDIPPYETYEKLYEKLL
TAVEETCGFAVE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctggcactcgaagaaacgggtcgagcatcaaaatccgtctgacagtatta
tgtgccaagaacctggcaaagaaggatttcttcaggttacctgacccttttgccaaaata
gtagtagatggatcaggtcagtgccattcgacagacacagtgaagagcacactggaccca
aagtggaaccagcactatgatctatatattggaaaaacagactcgatcaccatcagtgtg
tggaaccacaagaaaatccacaagaaacagggagctggcttcctgggctgtgtgagactt
ttatccaatgcgatcagcaggctaaaggacactggctaccagcgtttggatctgtgcaaa
ctaaaccccacagacagcgatgcagtacgtggccaaatagtagtaagtttacagacgcga
gacaggataggcactggaggagctgttgtggactgtagaggacttttggaaaatgaaggc
ccagtttttgaagactcggggcccggaaggccgctcagctgtttcacagaggagccgttg
ccatacacagacagcactggagccgcagggggagggaactgccgcttcctggactctccc
aatcaggagcagaggcttcaggcacagcgcctccgaaatcaagacaccagaggtcacaca
cacacccctcagaaccggccacacgggagccaatcccccgacctacctgagggttacgaa
caaaggacgacagtacaggggcaggtatactttctacatacacagactggagtcagtacc
tggcacgacccaagaataccaagggacctcaacagtgtcagctgcgaagatttaggtcct
ctgcctccagggtgggaggtcagaagtacagtgtcgggaaggatatattttgttgaccac
aataacagaacgacacaattcacagacccaagattacaccacataatgagtcagcattct
caagtaaaagaatctggccagcagctgcctgtgcagactgaggttcctccagaggatgga
gaaggagagctccctgtacgctatgagagggacttggtgcagaaactgaaattgctaagg
catgagctctcattgcagcagccgcaagctggccactgtcgcattgaggtatccagggag
gagatttttgaggagtcgtacagacagatcatgaagatgcggcccaaagacctgaagaaa
aggctgatggtaaagttccggggagaagaaggactggactacggtggggtggcaagggag
tggttgtatctcctgtgtcatgaaatgctaaatccatattatggactgttccagtattcc
acggataacatttacacactgcaaataaatccagactcctctattaatccggaccatttg
tcatatttccactttgttgggcggataatgggcctggctgttttccacggacactacatt
aacggaggttttacactgcctttctataagcagctgctaggtaaacccatacagctgtcc
gacctagaaactgtggatccggagttacacaaaagcttagtgtggattcttgagaatgac
atcaccccagtactggatcataccttttgtgtagagcataatgcatttggtaaatttctc
caacatgaactcaaaccaaatggaagaaacatccctgtaatggaggagaacaagaaggaa
tatgtaaggttgtacgtgaactggaggtttatgagagggattgaggctcagtttctagcc
ttgcaaaaaggatttaacgagttgattccacagcatttgttaaagccctttgatcacaag
gaactagagctaatcatcggaggcctgggtaagctagacctcaacgactggaaggccaat
acccggctgaagcactgtgtggctgacagcaacatggtcaagtggttctggcaggcagtg
gagtcatttgatgaggagaggagagggaggctgctgcagttcgttacaggctccacccgc
gtcccactgcaggggttcaaagcactgcaaggtgccaccatgtcctcaggaccctgggtc
ttcactgatccatctagactcgctaccaacacagacaacctgcctaaangccacacttgc
tttaatcggattgacattccgccgtacgaaacgtatgaaaagctgtacgagaaacttctg
accgccgtggaggagacctgtgggtttgccgtggagtga
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