Polyodon spathula (Mississippi paddlefish): 121300892
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Entry
121300892 CDS
T07273
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121300892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121300892
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121300892
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121300892
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121300892
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCHC
zf-CCCH_12
zf-CCCH_2
zf-CCCH_4
zf-CCCH_RBM22
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
121300892
NCBI-ProteinID:
XP_041085793
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All DBs
Position
26:complement(14721657..14726436)
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AA seq
276 aa
AA seq
DB search
MQDLLAAVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACIKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHSRRYICVNYLVGFCPEGTACKHVHPRFELPMGTTEQPP
LPQQPPMQQKSRNLLNQNVTPVIQRSSSSLIQLTSTNTTSNQQRMLQGFGAMQYHGNSTG
SRGPRPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctgcttgctgctgttgatcatattaaattcgatctggagatcgctgtggag
cagcagctgggagcacagcctctgccgtttcctggcatggacaaatctggggctgctgtg
tgtgaattcttcctgaaagctgcatgtataaaaggaggcatgtgtccattccgccacatc
agtggagagaagacggtggtgtgtaagcactggctgagggggctgtgtaagaaaggggac
cagtgcgagtttctgcacgagtatgacatgaccaagatgccagagtgttacttctactcc
aagtttggagagtgcagtaataaggagtgcccgttcttgcacattgaccccgagtcaaaa
atcaaagactgcccgtggtacgaccgaggattctgtaaacatggtcccctatgcagacac
aggcactctcgaagatatatctgcgtcaattacctggtcgggttctgtcctgaagggacc
gcctgtaaacacgtgcatcctcgctttgagttgccaatgggaactacggaacaaccgccg
ttacctcagcaaccgcccatgcagcagaaatcacggaaccttctgaatcaaaatgttact
ccagtgattcagaggtcatcgtcctccctgattcagctcacaagtaccaacaccacctcc
aaccagcagaggatgctgcaggggtttggagccatgcaataccatggcaacagcacagga
agcagagggcccaggcctctggagcaggtcacctgttacaagtgcggtgagaaggggcac
tatgcaaaccgatgtaccaaagggcacctggcgttcctgagtgggcagtaa
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