Polyodon spathula (Mississippi paddlefish): 121300897
Help
Entry
121300897 CDS
T07273
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa00260
Glycine, serine and threonine metabolism
pspa00630
Glyoxylate and dicarboxylate metabolism
pspa00670
One carbon pool by folate
pspa01100
Metabolic pathways
pspa01200
Carbon metabolism
pspa01230
Biosynthesis of amino acids
pspa01240
Biosynthesis of cofactors
pspa04981
Folate transport and metabolism
Module
pspa_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
121300897 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
121300897 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
121300897 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
121300897 (shmt1)
Enzymes [BR:
pspa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
121300897 (shmt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
SHCBP_N
DegT_DnrJ_EryC1
E2_bind
Motif
Other DBs
NCBI-GeneID:
121300897
NCBI-ProteinID:
XP_041085800
LinkDB
All DBs
Position
26:complement(15518183..15523842)
Genome browser
AA seq
486 aa
AA seq
DB search
MAHTALINEQQRSKDSWQSHNNMVLEPLSSNDTQVYEIIKKEKRRQTYGLELIASENFAS
RAVLEALGSCMNNKYSEGYPGQRYYGGTEFVDELERLCQKRALEAYGLDPEKWGCNVQPY
SGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDT
GYIDYDRLEENARLFHPKLIIAGVSCYSRHLDYARMRKIADENGAYLMADMAHISGLVAA
RVIPAPFDYCDVVSTTTHKTLRGCRAGMIFYRKGVRSADPKTGKETSYNLEGPINQAVFP
GLQGGPHNHAIAGVAVALKQAMTPEFKAYQVQVLANCKAMADALIDLGYKVVTGGSDNHL
ILVDLRPRGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLVEDDF
RTVVKFIHKGVELTLEIQKDMNPKATLKEFREKLANDEKYQMKVKQLREEVETFAGQFPM
PGLPDL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggctcacacagcactcataaacgaacagcagagaagcaaagactcctggcagtctcac
aacaacatggtgctggaaccgctcagcagcaatgacacgcaggtttacgaaatcatcaag
aaggagaaaagacggcagacgtacggtttggagctcattgcctccgagaacttcgccagc
cgagcggtcctggaagccctgggttcctgcatgaataataagtactcggaggggtacccc
gggcaaaggtattatggtggcactgagtttgtggacgaactggagaggttgtgtcagaag
agagcgttggaagcgtacggcctggacccagagaagtggggatgtaatgtccagccttac
tctggatctcccgctaactttgccgtgtacacggctctagtggagccgcatgggaggatc
atgggactggatctcccggacgggggtcacctgacgcacggcttcatgaccgacaaaaag
aagatctccgccacgtccattttctttgagtctatgccgtacaaggtaaaccccgacact
ggttacatagactatgaccgactggaagagaatgccagactcttccatcctaaactaata
attgcaggtgtcagctgctattcacgccacctggactacgcccggatgaggaagattgct
gatgagaatggcgcctacctaatggcagacatggctcacattagcggactggtggcggcc
agggtcatccctgccccgtttgactactgcgacgtcgtctcgaccaccactcacaaaact
ctgagaggctgccgggctggcatgatcttctacaggaaaggagttcgcagtgcagacccg
aagactggcaaagagacttcttacaatctagaaggacctatcaaccaggccgtattccca
ggactgcagggaggaccacacaaccacgccattgcaggtgttgctgtagctctgaaacag
gcaatgacccctgaattcaaagcctatcaggtacaagtgctggcgaactgcaaagctatg
gctgatgcattgatagacctgggctacaaagttgtcactggtggctccgataaccatctg
atcctggttgacctgcggcccagaggcacggacgggggcagggcagagaaggttctggaa
gcctgttcgatcgcctgcaataagaatacctgtccaggtgataaaagtgccttgcggccc
agtgggttaagactgggaactccagctctcacctcccgaggactggtggaagatgatttc
agaacagtagtgaagtttattcacaaaggtgtcgagctgacccttgagattcagaaggat
atgaacccgaaagccaccctgaaggagttcagggagaagctggctaatgatgagaaatac
caaatgaaagtgaagcagctccgggaggaggtggaaaccttcgctgggcagttcccaatg
cctggactgcctgatctttaa
DBGET
integrated database retrieval system
