Polyodon spathula (Mississippi paddlefish): 121300934
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Entry
121300934 CDS
T07273
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb isoform X1
KO
K10357
myosin V
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
121300934 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121300934 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
pspa04131
]
121300934 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121300934 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121300934 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
121300934 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
121300934 (si:dkey-110c1.10)
Membrane trafficking [BR:
pspa04131
]
Others
Actin-binding proteins
Myosins
121300934 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
121300934 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
121300934 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
121300934
NCBI-ProteinID:
XP_041085864
LinkDB
All DBs
Position
26:complement(20241620..20263444)
Genome browser
AA seq
1719 aa
AA seq
DB search
MSAADLYTKLTRVWVPDPEQVWVPAQLSHDYRDGDGCLHLQLSDGTEVQYTVAPGPSPGL
PPLRNPDILEGENDLTALSYLHEPAVLHNLRVRFLDYSSIYTYCGIILVAINPYEQLPIY
GEDVIDAYSGQNMADMDPHIFSVAEEAYRQMAREEQNQSIIISGESGAGKTVSAKFTMRY
FAAVGGSARETSVEERVLESNPIMEAIGNAKTTRNDNSSRFGKYIEIGFGRKGDIIGANM
RTYLLEKSRVVFQTTEERNYHIFYQLCASRHLPELSALGLGGAEEFQYTSGNVQIPGTDD
AADLERTRNSFSVLGVRPGLQMELFRILAAILHLGNVKIQSSGRDGERSSVNAEDRSLHL
FCQLLAVERSQMAHWLCHRRLAVAGEMLVKPMGWQQACEARDALSKHVYGQMFTWTVGRL
NGALRAQRQQPHSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNGHVFQLEQEEYL
REEIPWTRIEFSDNQPCIELIEGKLGVLDLLDEECRMPRGSDESWAQKLYMRHQNQSPHF
SKPRLSNTAFIIVHFADRVQYECDGFLDKNRDTVFEEPINILKASKSELVAELFQDESRG
DVPPLSGVTTAVPNGSLRSSRKGGSTARREHKQTVGFQFRQSLQLLMETLNSTTPHYVRC
IKPNDLKQPFLFDPKRAVQQLRACGVLETIRISAAGYPSRWTYPEFFNRYRVMMQCRDPG
LEDRQAACRAALGSLIPDPDQYRFGKTKIFFRAGQVALLEKLRASRLRAACVEVQRRVRG
WLERKRYQHARQAALTLQNYTRGWLARRLAQCLRYTRAALVLQKSYRMVQVRRLYLLIRS
AAVTIQAFARGAIARCLYRQLRAERKAVLLQARVRGWSARRAFLHVRAAVLYLQCCYRRM
QARRELKQRRMEARSVEHYRQLNKGMEVKLMQLQCRADEQSRESSLLKERLSQERAAHCT
ELARLQGELSRLAGSAQGEARSTALAQELSALRGEREREREERRSAEERAAQEISRLTQA
VESLQREKAALIQERETLNTSLQEHERACEERVSQQVALVTSGLRSELEEERGRYQGLLK
EFSRLEQRYENLKEEMNFSERFLGHRRSASSQSLILESSPPIPAWSSEREARTSVTSPEW
ERRVTVTSPEWERRVTVTSPERERRVTVTSPSSPIATSPQDSLLMAVGLFKDGRMREEDL
RHAYDAVRVANKLLESQLVSQRQQWDSEMQALQLQVGVQREEVDRLTQALAHTLTLPPET
GLQLGLQEQLARLAADNLELMEQVESQEQVSRRLRRELYSLKQAGWGSAGPAPGTEVLSG
GNATPTPHKEVTLQGLLECRREDEARLIKNLITGLCPEVTRTLTPGLPAHILFLCMRQAD
WRGEEQRARALCTAAVTAIKGALKKHSADFELAAFWLSNTCLLMHLLREFSPGESSQTDE
QTLLTFDPSDLRKALSDLSIQIYQQLIRIAESRLQPMIVPAMLESETIPGLSSGGKSLGS
HKRAASGAGEKGEGVQPHSMDSLLRELSSLHLTLSHQALHPEVCRQAFRQISHLLTATTL
NNLLLRKDMCSWSKGLQIRYNVSQLEDWLRGRSLQLGGAVDSLEPLIQASQLLQVSKRSE
SDARAIEETCTALSPSQIVKILSLYTPLNEFEERVTLNFIRSVQALLNERPRGKARQLLM
DVRHVFPVTFPPSLSPSLSQQPEQLQIPDSLNLAFLRQV
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagctgatctctacaccaagctgactagggtgtgggtcccggatcccgagcag
gtctgggttcctgctcagctgagccatgactacagagacggagatggctgcctccacctt
cagctctcagacggaacagaggtgcagtacactgtggctcccggcccctcccctggcctg
cctccccttcggaaccccgatatcctggagggggagaacgacctcactgccctgagctac
ctgcacgagcccgccgtgctgcacaacctacgagtgcgcttcctggactacagcagcatc
tacacctactgcggcatcattctggtggccatcaacccctacgagcagctgccgatttac
ggagaggatgtgatcgatgcctacagcgggcagaacatggcagacatggacccacacatc
ttctctgtggcagaggaggcatatcggcagatggcacgggaggagcagaaccagtctatc
attatcagcggagagtccggggcgggaaaaaccgtctccgccaaattcaccatgaggtac
ttcgctgctgtaggggggtcagcacgggagacaagcgtggaggagagagtgctggagtcc
aaccccatcatggaggcgatcgggaacgcaaagacgacgcggaatgacaacagcagccgc
tttggaaagtacatcgagatcggattcgggcgcaagggtgacatcatcggagccaacatg
aggacctacctgctcgagaaatccagggtcgtctttcagactacagaagagagaaactat
catatattctaccagctgtgtgcttccagacacctgcctgagctcagcgccctggggctg
ggtggcgctgaagaattccagtacaccagcgggaatgttcagatcccggggactgacgac
gccgccgatctggagcgaaccaggaattccttcagtgtgctgggtgtgcgccccggcctg
cagatggagctcttccggatcctggcggcaatcctgcacctcgggaacgtcaagatccag
agcagcgggcgagacggcgagcgatccagcgtcaacgcggaggaccggtctctgcatctc
ttctgccagctgctggctgtggagcgctctcagatggctcactggctatgccaccggcgg
ctggcggttgccggggagatgctggtgaagccgatggggtggcagcaggcgtgcgaggca
cgggacgccctctccaagcacgtgtacgggcagatgttcacctggacagtcggccggctg
aatggggccctgcgggctcagcgccaacagccacactccttcattggggtcctcgacatc
tacgggtttgaaacgtttgagaagaacagtttcgagcagttttgtataaattacgccaac
gagaagctgcagcagcagttcaatgggcacgtcttccagctggagcaggaggagtacttg
agggaggagatcccctggacccgcatcgagttcagcgacaaccagccgtgcatcgagctg
atcgagggcaaactgggagtactggacctgctggacgaggagtgcaggatgcccaggggg
tctgacgagagctgggcgcagaagctgtacatgcggcaccagaaccagagcccacacttc
agcaagcctcgcctctccaacaccgccttcatcatcgtgcactttgctgacagggtgcag
tacgagtgcgatggcttcctagacaaaaaccgagacaccgtctttgaggagccaatcaac
attctcaaagccagcaagtcggagctggtggcagagctgttccaagacgagtcaagaggg
gatgtcccacccctctctggagtgacaactgcagtgcccaatgggagcctgcggtccagc
aggaagggcgggagcactgcgcgcagggagcacaaacagactgtgggctttcagttccgt
caatccctgcagctcctgatggaaactctgaactccacaacccctcactacgtgcgctgc
atcaaacccaacgacctcaagcagcccttcctgttcgacccgaagcgtgcagtccagcag
ctccgggcttgtggtgttctggagacgattcggatcagcgccgctggctacccttccaga
tggacgtaccccgagttctttaaccggtaccgggtgatgatgcagtgccgtgacccaggt
ttggaggataggcaggcagcatgccgggctgccctaggctccctaattccggacccggat
cagtaccgcttcgggaaaacaaagatcttcttccgggcgggccaggtggctctgctggag
aagctgagggccagccggctgcgggctgcctgcgtggaggtgcagaggagggtgcgaggc
tggctggagcgcaagcgctaccaacacgcccgccaggcagcactgacactgcagaactac
accaggggctggctggcacggaggctggcacagtgtctgcgctacaccagggcagcgctg
gttctgcagaagagctaccggatggtccaggtgcggcggctgtacctgctgatccgctcc
gccgctgtcaccatccaggccttcgcacgaggagcgattgcacgctgcctctaccggcag
ctgcgtgcggagaggaaggctgtgctcctgcaggctcgtgtgcggggctggtctgcgcgc
cgtgctttcctgcacgttcgcgcggccgtgctgtacctgcagtgctgctaccggcgcatg
caagcgcgcagagagctgaagcagcgacgcatggaggcccgctctgtggagcactaccga
cagctcaacaagggcatggaggtcaaactgatgcagctccaatgcagagcagacgagcag
tccagggagagcagcctcctgaaggagcgtctatcccaggagcgagcggctcactgcact
gagctggcccgcctgcagggggagctctctaggctggcaggcagcgcccagggcgaggct
cggagcacagccctggcacaggaactgagcgccctgcggggggagagggagcgagagaga
gaggagcggaggagtgcagaggagagggcggcccaggagatctctcggctcacccaggcc
gtggagtctcttcagagagagaaagctgctctgatacaagagagggagacactgaacacc
tccttacaagagcacgagagagcgtgtgaagagcgtgtcagtcagcaggtggcgctagtg
acctccgggctgcgttcggagctggaggaggagcgcggccggtaccagggtcttctgaaa
gagttctcccgtctggagcagcgatacgagaacctgaaggaagagatgaacttcagtgag
aggttcctgggtcacaggaggagcgcgtcctcacagagcctaattctggagagcagcccg
cccatcccagcttggtctagcgagagagaggctagaaccagcgtgacatcaccggaatgg
gagcgcagagtcaccgtgacatcaccggaatgggagcgcagagtcactgtgacatcaccg
gaacgggagcgcagagtcaccgtgacatcaccaagcagccccatagcaacctctcctcag
gactctctgttgatggcggtcggattgtttaaagatgggcgaatgagggaggaggatctg
agacatgcctacgatgctgtgcgcgtggccaacaagttactggagtcccagctggtgtcc
cagcggcagcagtgggacagcgagatgcaggctctgcagctgcaggttggagttcagaga
gaggaggtggacaggctgacccaggcactggcacacactctcacactgccccccgagaca
ggcctgcagcttgggctacaggaacaacttgcgcgcctggcagccgacaacctggagctg
atggagcaggtggagagtcaggagcaggtctctcgcaggctcaggagggagctgtactct
ctgaagcaggccggctggggctctgcaggaccagctccagggacggaggttctctctgga
gggaatgccacgcctactcctcacaaagaagtcacgcttcagggtctgctggagtgcagg
agggaggacgaggcacggctgatcaagaacctcattacaggcctgtgcccggaagtgact
cgaaccctgaccccagggctgccagctcacatcctgttcctgtgcatgaggcaggcggac
tggcggggagaggagcagcgggcacgtgcgctgtgcactgccgccgtcactgccatcaag
ggggcgctcaagaaacactctgccgattttgagctggcggctttctggctatccaacacc
tgcctgctgatgcacctgctgagagagttcagccctggagagagttctcagacagatgag
cagacgctgctgacctttgacccgagtgacctgcgcaaagccctgagtgacctgtccatc
cagatctatcagcagctgatccgcatcgcagagagcaggctgcagcccatgatcgtgccg
gcgatgctggagagtgagacgatcccggggctgtccagcggagggaagagtctggggtct
cacaagcgagcagcgagcggggctggggagaagggggagggggtgcagccccacagcatg
gactccctcctacgagagctcagctccctgcacctcactctaagccatcaggctctccac
cctgaggtgtgcagacaggccttccgccagatcagccacctgctcacagccaccaccctc
aacaatctgctactcagaaaggacatgtgcagctggagcaagggcctgcagatcaggtac
aatgtgagtcagctggaggactggctgcggggccgctccctgcagctaggtggcgctgtg
gattctttagagccgctgatccaggcctcccagctcctgcaggtcagcaagcgctcagag
agtgatgcgcgggccatcgaggagacctgcactgccctgtccccttcgcagattgtgaag
atcctcagcctgtacacgcccctcaatgagtttgaggagagagtcactctgaacttcatc
cgctccgtgcaggctctgctgaatgagcggcccagggggaaggctcgccagctcctgatg
gatgtacgccatgttttcccggtcaccttccccccctctctctccccctccctcagccag
cagccagagcagctccagatcccagacagcctcaatctggccttcctgagacaggtctga
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integrated database retrieval system
