Polyodon spathula (Mississippi paddlefish): 121301004
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Entry
121301004 CDS
T07273
Name
(RefSeq) ubiquitin-60S ribosomal protein L40
KO
K02927
ubiquitin-large subunit ribosomal protein L40e
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03010
Ribosome
pspa04120
Ubiquitin mediated proteolysis
pspa04137
Mitophagy - animal
pspa04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
121301004
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121301004
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121301004
04137 Mitophagy - animal
121301004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
pspa03011
]
121301004
04121 Ubiquitin system [BR:
pspa04121
]
121301004
Ribosome [BR:
pspa03011
]
Ribosomal proteins
Eukaryotes
Large subunit
121301004
Archaea
121301004
Ubiquitin system [BR:
pspa04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
121301004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_L40e
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
DUF2604
TBK1_ULD
Ubiquitin_5
OTU1_UBXL
Dsc3_N
UBL_UBAC1
Motif
Other DBs
NCBI-GeneID:
121301004
NCBI-ProteinID:
XP_041085998
LinkDB
All DBs
Position
26:complement(2138665..2142487)
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AA seq
128 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRMLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
LRPKKKLK
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgcagatctttgtgaaaaccctgacgggtaaaactatcaccctcgaggttgagcccagt
gatactattgagaatgtgaaggccaagatccaagacaaggaaggtattccccctgaccag
cagcgtctgatctttgctggcaagcagctggaagatggacgcacgctgtcagactacaac
atccagaaagaatccaccttgcatctggtcctgcgtctgcggggaggcatcattgagcca
tcccttcgtatgctggctcagaagtacaactgcgacaaaatgatctgccgcaaatgctac
gcccgtcttcaccctcgcgcagtgaactgccgcaagaagaagtgcggacacaccaacaac
ctgcgccccaagaagaagctgaagtaa
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