Polyodon spathula (Mississippi paddlefish): 121301015
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Entry
121301015 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6-like isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121301015
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121301015
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
U-box type E3
121301015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-CCHC
zf-RING_UBOX
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
121301015
NCBI-ProteinID:
XP_041086021
LinkDB
All DBs
Position
26:complement(10060613..10082055)
Genome browser
AA seq
1836 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHITLCDLKKQIMGRERLKASDCDLQITNAQTKEEYTDD
GALIPKNSSVIIRRIPIGGVKATSKTYVIDRTESSSGSSKAIDDSAASITLAQLSKTANL
AEANASEDDKIRAMMSQSNHEYDPVHYMKKLLGPPPPNYTCFRCMKTGHYIRNCPTNGDK
NFESTPRIKKSTGIPRSFMMEVDDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLP
QEQSSSSDEEDPVPDELLCLICKDIMNDAVVIPCCGNSYCDDCIRTFLLESDEHMCPTCN
QTDVSPDCLIANKFLRQAVNNFKNETGYTKRLRKGQALQTAPMQGQSRPQVQRPVQPAAR
PTSSRQQDPLVANIPAPVATPSPVIPAAIPTPVPHQTQTPAAVPPAAPIVQVNLVSSGPT
LEVSTSVPSPQPPGKHEEPVSVKEPERIVLTPATSLMVSAATSMTTSSVPKVPVLGQPHS
VGHSIPTTDFFSGQPMRTTTVRPGGSRQGWDASSSRGRPQSDRPSRTQATTLPSMAPVYV
PPPSLFPPPSHTLPLPPGVPLPQFPPLFQPPTTGYSVPPPLFPPVSTTVAAPWVPTVTTV
AQGSAIPTIPQAPPLSREEFYRQQRRLKEDSNCRFVGREKSKLDEFTNDFAKELLEYRKI
QKERRRSYSRSKSPYSGSSFSGSSYSYSKSRSRSSRSYSRSGSRSHSRSYSRSPVYSRRG
GGGRSRSYRSRSRSHGYRRSRTRSPAYRGGGGGGGGGGGGYRSRSRSPGYRGHTPSKRPA
PPPQPEGDREHFNRYREPPPYDAKASYGRSVDQRDPFERERYREWERKYREWYNEYYTPP
GNQPRPRPPPSNREHFIAERFGPPVVRRDNSPYSRGRREDYPPSGQSQSQRVRNVPGNYP
EKFVYKEGHKSSKEPRKSKEKEADNPLADGKGIKHKKHRKKRKGDENELFPGVDSLDGSR
KPTGGDEGKGDSVLMPPSRDDATPVRDEPMESPSVLYKAMAEKDKREKVKAKGEKLKRKP
ESGAPKKDSSVKTHKPSREKQVDADNEKSSRVEPPMKKPKEDSSQKAEASKQHVSQKEDK
AALSRKGQQKPAKHHQEPKVVKEEKTKEKKEYVKEASKHEKFPSKEEKPKKYVEKAAKVE
DKSRKTSDVKQEKRKRKEEKHIEKDLEMPLKSPRIETVEVAKQVVKQSPKSKPEPEKYPE
KTIAKPVVEKVDKEERIVPVRKIKINRETGKKIVSGENIALVEETDGAENIRAEKMKTKI
RRKVQAADGTASTLVDYTSTSSTGGSPVRRLEEKLDMKKTVVKTMEEYNNDSSTPAEDEI
VMIQVPLSKWEKEDYESEDDDAKSALVAGSGKSAIVKNVAVTSSSEVKQTDKDSPQFEKM
PKAAKEPASEELQPESKVLKTIVPSEKEEIGEKEIGEKEMIREKEKISEKVIREKEIREK
EKSSEKEIREKEKSSEKEIREKEHPAVDMEKRKAPPSQSDKERNPDRSSDKGSEKSVSSY
SSSKDRTAEKSNAGSRASSVKDNLTAIDKKTDYAGSNRDNPSSRRKEEKLKESNKRRDSP
SLTKEHAPSQKSRDRGVHVDIPRKVATESKRSDHSPARDKKTRTDYKNAPDLKRAVVDDH
RSDKMSSKDTNRHATTEMRSKKEKERDHGGYKSHRSESPDVRTDTERTVGRNEREHNKNK
PLLVRSARLSSDLARETDEAAFVPDYSESDGESEASDHNHKLEQVKEKGVVAAPLPPSLS
PTPSQSTSVNRSHNQSPTESQPHSRSSSASSAGSQDSKKKKKKKDKKHKKHKKHKKHKKH
AGNESDPENKGQKHKHKKKKSKKSKEKDDQKPKVSV
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgtacattataagttttcctctaaactgaactatgacacggtcacttttgat
ggcctccacatcacattatgtgatctcaaaaagcagatcatgggaagagagaggctgaag
gcgtcggattgcgatcttcagattaccaatgcacagactaaagaagagtacacagatgat
ggcgcccttattcccaaaaattcttctgtcattattcgaaggattcctattggaggagtt
aaagctactagcaaaacatatgtcattgatcgtactgaatcttcaagtggatcttcaaaa
gcaattgatgattctgctgcttctattacactggcccagctatcgaagaccgccaatttg
gcagaagctaatgcatccgaagacgataaaattagagcaatgatgtcacagtccaaccat
gagtatgatccagttcattacatgaagaagcttttggggccgccaccacccaattacact
tgttttcgttgtatgaaaactggacactatattagaaactgtccaaccaatggggacaaa
aattttgaatcaactccaaggataaaaaagagcactgggattcctcgaagcttcatgatg
gaggttgatgacccgaacatgaaaggagccatgcttacaaacactgggaaatatgctatt
ccaactattgatgctgaagcctatgcgattggaaaaaaggagaagccccctttcctccca
caggagcagtcttcatcttctgacgaggaggaccctgtccctgatgagctgctgtgcctg
atttgcaaggatatcatgaatgatgcagtcgtaattccatgctgtggaaacagttactgt
gatgattgtattagaacatttctgctggagtcagatgaacatatgtgtcctacttgcaat
cagacggatgtttcacctgattgcttgattgccaataaatttttacgacaggctgtaaac
aattttaaaaatgaaactggctacaccaaaaggcttcgtaagggacaggctctgcaaact
gcaccgatgcagggtcagtccagaccacaagtgcagcgtcctgtccagccagctgcaaga
ccgacatcctccaggcagcaggatcccctagtggccaatatccctgcacctgttgctact
ccttcccccgtcattcctgctgctatacccactccagtgccgcaccagacacagacccct
gccgctgttccacctgctgcaccaattgtccaggtgaatcttgtctccagtggccctact
ttagaagtgtccacgtcggtgccctctccacagccaccagggaagcacgaagaacctgtt
tcagtaaaagagcctgagagaattgttttaactcctgccacatctttgatggtttctgca
gctacatctatgacaacatcttctgttccaaaggttcctgtgcttggtcaacctcattca
gttggccactctatacctacaacagattttttttcaggtcagccaatgagaaccaccact
gttcgtcctggtggcagtcgacaaggctgggatgcttcatccagcagaggtcgaccgcag
agtgaccggccttccagaacacaagcgactactttgccaagcatggcccctgtttacgtg
cctcccccgtctcttttccctcctccctcccacaccttgcctcttccacctggagtgcca
cttcctcagttccctcctctgtttcagccacctaccactgggtacagtgttccccctcca
ttgttccctccagtctcaacaactgttgcagctccatgggttcccactgtaaccactgta
gcacagggcagtgccattcctaccatcccacaggcacccccgctatctagggaagagttc
tacaggcaacagcgtagactaaaagaggattccaactgtcgcttcgttggtagggagaag
tctaagcttgatgagtttactaacgactttgctaaagaattattggaatatagaaagatc
caaaaggaaaggaggcgatcctattcaaggtcaaagtcgccatacagcggctcatcgttc
agtggcagttcctactcttactcaaaatccagatcacgatcctcccgatcctactcgagg
tctggcagccgatcccattctcgctcctactccagatctccagtgtactcccgaagaggt
gggggaggcaggagccggagttatcgctccaggtcgcgatcacacggatatcgccgatcc
cggaccaggtcccctgcttatcgaggaggaggaggaggaggaggaggaggaggaggagga
tatcgctctcgttcaagatctccagggtaccggggccatacccccagtaaacgacctgca
ccaccgccacagcctgaaggtgacagagagcacttcaacagatatagagagccgcccccc
tatgatgccaaggcttcctatggtcgttctgtggaccagagagacccttttgagagggaa
agatacagggagtgggaaaggaagtaccgagaatggtataacgaatactacaccccccct
ggcaatcagccaaggcctaggcctcctccatctaatagagaacatttcattgcagaacgg
tttggcccaccagtggtcagacgggacaattcaccatacagtcgaggtcgcagagaggac
taccctccatctgggcagagtcagagccagagagttcgtaatgtgcctggaaactatcct
gagaagtttgtctataaagaagggcacaaaagcagcaaagagcctagaaaatcaaaggaa
aaagaagcagataatcctctagccgatggaaaaggtatcaaacataaaaagcacaggaaa
aagaggaaaggcgatgagaatgaactgttccctggtgtagattctttagatggctcgaga
aaacccaccggtggtgacgaaggtaagggggattctgtattgatgcctccaagcagggat
gatgccacccctgtcagagatgaacccatggaaagtccatctgtcctctataaagctatg
gctgagaaagacaaaagggaaaaggtgaaagcaaagggtgaaaaacttaagcgcaaacca
gaaagcggcgctcccaagaaagactcctcggtgaagacccacaaaccgtccagagaaaag
caggttgatgcagacaatgagaagtcttcacgtgtggagcccccaatgaaaaagccaaaa
gaagattcttctcagaaggctgaagcttcaaagcagcacgtgtcccagaaagaggacaag
gctgctctgtcccgcaaaggacagcagaaaccagctaaacaccatcaagagcctaaagtg
gttaaagaggagaagaccaaggagaagaaagagtatgtcaaggaggcatctaaacatgaa
aagttcccaagcaaggaggagaaaccaaagaaatatgtggaaaaggcggctaaagttgag
gacaaatctagaaaaacctcagatgttaaacaagagaagaggaaaagaaaagaagaaaaa
cacatagaaaaagatcttgaaatgcctcttaagtcccctagaattgaaactgtagaagtg
gcaaagcaagtggtaaagcaatctccaaaatcaaaacctgagcctgagaaatatccagaa
aagacaattgccaagcctgtagtggaaaaggtagataaagaagagagaattgttccagtg
agaaagatcaaaatcaaccgtgagactggcaaaaagattgtaagcggggaaaacatagct
ctagtggaagaaacagatggagcagaaaacattagggcagaaaaaatgaaaacaaaaata
cgaagaaaagtacaagctgcagatggaacagcttctaccttggtagattacaccagcact
agctccacaggaggcagcccagttagaagactagaagaaaagctggacatgaaaaagaca
gtggtgaagaccatggaagagtacaacaatgacagctcaactccagcagaagacgagatt
gttatgatccaagttcctctttcaaaatgggagaaggaagactatgaatcggaagatgat
gatgctaagtcagcattggttgctgggagtggaaaatctgctattgtgaaaaatgttgct
gtaacatcttccagcgaggtaaaacagactgacaaggactctccacagtttgagaaaatg
cccaaagcggccaaagagcctgccagtgaggaacttcagcctgaatccaaagttttgaag
acaattgtgccaagcgaaaaggaggagattggcgaaaaggagattggagaaaaggagatg
atcagagaaaaggagaagatcagtgaaaaggtgatcagagaaaaagagatcagagaaaag
gagaagagcagtgaaaaggagatcagagaaaaggagaagagcagcgaaaaggagatcaga
gaaaaggaacatccagctgtagacatggaaaagaggaaagcacctccttcccagtcagac
aaagaaagaaacccggataggtccagtgataaagggagtgaaaaaagtgtctcctcgtac
tcctcttctaaagacagaactgcagaaaaatctaatgctggttcccgggcatcttcagtt
aaagacaatttaacagccattgacaaaaagacagattatgctggaagtaaccgagataac
ccgagctctaggcgtaaagaagaaaaactgaaagaatccaacaagaggagggactcccct
tccctaactaaagaacatgctccaagtcaaaagagcagagataggggtgtgcatgttgac
attccaaggaaagtcgcaacagaatcaaagagatctgatcatagtcctgcaagggacaaa
aagacacgtacagattacaaaaatgccccagatttaaagcgtgcagtagtggatgaccat
cgatcagacaaaatgtctagtaaagatacaaacagacatgcaaccacagagatgagaagc
aaaaaggaaaaggaaagggatcatggtggttacaagtcacataggtccgagtcccccgat
gttaggactgacacggagagaactgttggccgaaatgagcgtgagcacaataagaacaag
ccactgctcgtccgatctgcccggctgtcatctgacttggccagagaaaccgacgaggct
gctttcgtgcctgactacagcgagagcgacggtgagagcgaagcctctgatcataaccat
aagcttgaacaagttaaagagaagggggtggtggcagctccccttcctcccagtttgagc
ccaaccccaagccagagtacaagtgtgaaccgcagtcacaaccagagccccacagagagc
cagcctcacagccgcagcagcagtgccagctctgccggcagccaagacagcaagaaaaag
aagaagaaaaaggacaagaagcacaaaaagcacaagaaacacaaaaaacacaagaagcac
gcaggcaacgaatctgatcccgaaaacaaaggccagaaacacaagcataagaaaaagaaa
tctaagaagagcaaggaaaaggatgaccaaaaaccaaaagtttctgtatga
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integrated database retrieval system
