Polyodon spathula (Mississippi paddlefish): 121301079
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Entry
121301079 CDS
T07273
Symbol
hmg20b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related
KO
K24650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121301079 (hmg20b)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
BRAF-HDAC complex
121301079 (hmg20b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
DUF4763
PI3K_P85_iSH2
BRE1
DUF4407
APG6_N
Motif
Other DBs
NCBI-GeneID:
121301079
NCBI-ProteinID:
XP_041086129
LinkDB
All DBs
Position
26:20194601..20200036
Genome browser
AA seq
321 aa
AA seq
DB search
MSQNAKNQTVGPVALPAGSQALNGGVKLEQREGPPRGPQPAERSAGSADEPVKKRGWPKG
KKRKKVLPNGPKAPVTGYVRFLNERREQIRSQHPELPFPEITKRLGAEWSRLDVSDKQRF
LDEAEKEKQQYMRELKEYQQSEAFRLSSDQIQDKKIKKEEPPSVIINAAGTGLGIKSGDL
SDRFSKFDVPIFTEEFLDQNKARESELRRLRKANVEFEEQNSVLQKHIEDMHSAKERLEA
ELAQDERETQVLQKHLGAIRQALSSSLSGVPLPGSGETPTPGTLDSYMTRLISVIESSPL
EYKRLVTKIKDIISHLDSENL
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagaacgccaagaaccagaccgtgggccccgtggccctgcctgcggggagccag
gctctgaacgggggagtgaagctggagcagagagaggggcctcctcgaggaccacagcct
gcagagcgatccgcggggagtgcagacgagccagtgaagaagcgcggctggccgaagggg
aagaagaggaagaaggttttgccgaacgggccgaaggctccagtgacggggtacgtgcgc
ttcctgaacgagaggcgggagcagatccgcagccagcaccccgagctgcccttcccagag
atcaccaagagactgggggccgagtggagccggctggacgtgtccgacaagcagcgcttc
ctggatgaggctgagaaggagaagcagcagtacatgagggagctgaaggagtaccagcag
agcgaggccttccgtctgagcagcgaccagatccaggacaagaagatcaagaaagaggag
ccgccctctgtgatcatcaacgctgctggaaccgggctggggatcaagagtggtgacctg
tcagaccgcttctcaaagttcgatgttcccatcttcactgaagagttcctggaccagaac
aaagctcgcgagtcggagctccgcaggctgcgcaaggcgaacgtggagttcgaggagcag
aactctgtgctgcagaagcacatcgaggacatgcacagcgccaaagagaggctggaggcg
gagctggcgcaggacgagcgggagacgcaggtcctgcagaaacacctgggggccattcga
caggccctgagcagcagcctctcaggggtgcccctgccaggttctggcgagacccccacc
cccggcacgctggactcctacatgacccgcctcatcagtgtcatcgagagcagcccactg
gagtacaagagactcgtcaccaagataaaggatatcatcagccacctggacagtgagaac
ctgtga
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integrated database retrieval system
