Polyodon spathula (Mississippi paddlefish): 121301092
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Entry
121301092 CDS
T07273
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121301092 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121301092 (usp42)
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121301092 (usp42)
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
121301092 (usp42)
Ubiquitin system [BR:
pspa04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121301092 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
121301092
NCBI-ProteinID:
XP_041086152
LinkDB
All DBs
Position
26:11454656..11470435
Genome browser
AA seq
1435 aa
AA seq
DB search
MTIVDKQTESSDPESGQSKPSGCLTPSSSGDMDSSSASWGAVSSALDAPKSKATSVGPTP
GAAVYSRSTAPVQEKAKSTIHKDQNLAGGGDGIAPPQKVLFPVEKLCLKWHQMHQIGAGL
QNLGNTCFLNSALQCLTYTAPLATYMLSREHSKTCHEAGFCMMCTMQNHITQVFANSGNV
IKPMSVINDLKRIAKHFRFGSQEDAHEFLRYTIDAMQKSCLPGNKLDRHTQATTLIHQIF
GGYLRSRVKCLNCKAVSDTFDPYLDVALEIKTVQSITKALEQFVKPEQLDGENAYKCTKC
KKMVPASKRFTIHRDSNVLTISLKCFANYNGGKITKDVRYPEFLDIRPFMSQSTGEPVIY
VLYAVLVHSGFSCHAGHYYCYIKASNGQWYQMNDSVVSTSDIRSVLNQQAYVLFYIRSPD
VKNGGDYNHSACTPGQSSPCPIVSQRLGGTKQQTTGFIGPQLPPHMAKSSNHINGNCSVK
EVPCSSKASASNIGLNRMGSSQPSTSFQNRPLNRPTVIPEPTKRPKLTFQIGQSKSARPS
HSQPNFHSSPLDKLYKPSTSTSTVTHSSSSSSSTAQSTSGAPSYTAPATVSQADTPPEPP
CSRVNGAPKRSASFLVPYAEESSDEEPGPVMENGHAKPCNGTVNGTRLDTFPTSSAIPPP
PDLGKNCSDVPYCKAELNGLTTMAVESEDARLTVETVSCPLKHTKPIENGLPKTNGFKHS
DKRTSDISDTLESIGASTTNTSEPAKKPKLTSHFEQSEKEKSPCLPSRGTTFPAAATVVN
PCVDRVQNLENCSAASPVKDAVRSPAPELCDKTLLVQEERAANTTMNSKTSALDPAIHAN
CNTDNKPNPNRETQMFQVKSENKQPPEAEETTLKQSVARTEGPVQLQTRHSDNSTGLKNP
VSCENVSKHVILNTTNSNISFWDKAKDQIKTCLETIKEESQEATLEHRQSPGKDRCAENR
KLTSRTDEQPRSSAEREEKSRIGELHSHSTEKDKRRTSDREKSYRHKSPHNVRYSEGKTK
LSEKYRYRSRSRETTNHKKSRLHDKDYCPCKYRSHSRDRSRSRDGYYRDREKDWRQERHT
YHSRDSYYRSKEELDRRFPQSSRDCEKSSSHYNRDWLHKEVLSSRPQWMNGTTSKENNCK
DFGKHDYCKGRLDSDHLRPSFSSSSSSHYSKHVKDKRTLGSNGRSSERNSEHARHESRWH
YDDHDTEDSDLERKRRRHLQDESSEERRARKHKKSKKKKKSKHKYRIRDHRSHQDSSEAN
SDSDSWKHKKKKKHRSDGSDQDKPQRSQYGKQNSRSGDESDSSNKASKSNDFRGVDVRTD
SQKQYPEEKEEQSHKEKNSQIESGYYTSSEHHRGYRSSQSDAEMYRCPLNRVHLEAKEKS
ENGADCQSSLRLVTEIGNQSGCKESEIDSSCRDTARCKFLLQASDKTSAIEETAH
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgactatagttgacaagcaaacagagtcttctgaccctgagtctggtcagtccaagccc
tctggctgcctgaccccctcctcctctggagacatggactcaagctcagcgagttgggga
gctgtgtcatccgccttggacgcccctaaaagtaaagccacttctgtaggaccgaccccg
ggagctgctgtttattccagaagtacagcacccgtgcaagagaaagcaaaatccaccata
cacaaggatcaaaacttggcagggggcggagatgggatcgctcctccacagaaagttcta
tttccagtggagaaactgtgtctaaagtggcatcagatgcatcagattggagctggactc
caaaatttgggcaacacttgcttcctgaactctgctctgcagtgcctcacctacacagcc
cctctggccacctacatgctgtcacgtgagcactccaaaacatgccacgaggctggattc
tgtatgatgtgcacaatgcagaatcatatcacccaggtgtttgccaactctggaaatgtc
ataaagcccatgtctgtcataaatgaccttaagcgtattgccaagcatttccgatttggt
agccaagaggatgcacatgaatttctccgctacactattgatgctatgcagaaatcgtgc
ctgccagggaacaagttggacagacacacccaggccaccacattaatacatcagatcttt
gggggttatttgcggtccagagtaaaatgtctgaattgcaaagcggtttctgacactttt
gatccctacctggatgttgctttggaaattaagactgtgcaaagcatcaccaaagcactt
gagcagtttgtaaagcctgaacagttggatggagaaaatgcttacaagtgcaccaagtgc
aagaaaatggttccagcttcaaaaaggtttacaatacacagagattccaatgtgcttacc
atatccttgaagtgctttgccaactacaatgggggcaagatcacaaaggacgtgaggtat
ccagaatttctagatattcgtccattcatgtcgcaatccactggggagccagttatatat
gtcctgtatgcagttctagtgcattctgggtttagctgccatgctggacactactattgt
tacataaaggccagtaatggacagtggtaccagatgaacgattctgtagtatccactagc
gacatccggtctgtgctcaatcagcaggcttatgtgctgttttacataaggtctccagat
gtgaagaacggaggagattataatcattccgcatgcaccccaggacagtcctccccttgc
cccatagtgagtcagcgcctgggtggtaccaaacagcagacaacaggcttcattggaccg
cagctcccccctcacatggctaagagttctaaccatatcaatggaaactgctctgtgaag
gaggtcccctgcagttccaaggcaagtgccagcaacattggtttgaacaggatggggtcg
agccagccttctacttctttccagaaccgcccactaaacaggcccaccgttattccagaa
cccactaaaaggccaaagctgaccttccaaattggacagagcaagtcggcacgtccttcc
cattcccagcccaacttccacagcagccccctggacaagctgtacaagcccagcacttcc
acatccaccgtcacccactcctcctcctcctcctcctctactgctcagtctacctcagga
gcacccagctatacagctcctgccacagtatcacaagccgatacaccccctgagccccct
tgttccagggtgaatggcgcccccaagcgtagcgccagcttcctcgttccgtatgctgag
gaatcctcggacgaggagcccggtccggttatggagaatgggcatgcaaagccctgcaat
ggaacggttaacggaactagattggacacattcccgacctcgagtgctattcctccacct
ccagacctcggaaagaattgttcggatgtgccttattgcaaggcagagttgaacggcctg
accacgatggcagtggagtctgaagatgccaggctcacggttgaaacagtgagctgccct
ttgaagcatactaaacccattgagaacggcttgccaaaaactaacggttttaaacacagt
gataagcgaacttctgatatttctgacactctggaaagcattggtgccagtactacaaat
acatcagaacccgctaaaaagccaaagctgacttcccatttcgaacagagtgaaaaagaa
aaaagtccttgtttgccctcaagggggacaacttttccagcagctgctactgttgtcaat
ccctgtgtggacagggttcaaaatctggaaaactgttcagccgcctctcctgttaaagat
gcagtcaggtctccagcccctgaactgtgtgataaaactcttcttgttcaagaagaaagg
gctgccaatactaccatgaacagtaaaacctctgcccttgaccctgcaattcatgctaat
tgtaatactgataacaaaccaaaccctaatagggaaactcaaatgttccaggtaaagagt
gaaaataagcaacctccagaggcggaggagacaactctcaaacaatctgttgcaaggaca
gagggtcctgtccagcttcaaacgaggcattcagataactccactggcttgaaaaatcct
gttagctgtgaaaatgttagcaaacatgtcatattaaacaccactaattctaatatatct
ttttgggacaaagcaaaggatcagatcaagacatgtcttgagactataaaggaagaaagt
caagaagccacattagaacacagacagtccccagggaaagacaggtgtgctgaaaacagg
aagctgacatctcggactgatgaacagccaaggagctcagcagagagggaggagaaaagc
agaatcggagaattgcattcacatagcaccgagaaggacaaacgcagaacgtcagacagg
gaaaaaagttatagacacaaatctcctcataacgtaagatatagtgaaggtaaaacaaag
ctttctgagaagtacaggtatcgatctagaagtagggaaacaaccaaccacaagaagagt
aggctgcatgataaagactattgtccctgtaaatatcgatcccatagcagagataggtcc
cgtagtagggatgggtattatagagacagagaaaaggactggaggcaggaaagacacact
taccacagcagggactcttactacaggtccaaagaagagctggacaggaggttccctcaa
agcagtagggactgtgagaagtcatccagtcactataacagggactggcttcacaaagaa
gtgctttcctccagaccccaatggatgaatgggactacaagcaaagagaacaattgtaag
gactttggcaaacatgattactgcaagggcagattagattctgatcatttacgaccttcc
ttctcctcctcctcctcctcccactattccaagcacgtcaaggacaaacgcaccttgggc
tccaatgggaggagctcagaacgcaatagcgagcatgcaagacacgagagcagatggcac
tacgacgaccacgacactgaggatagtgatttggagagaaagcggaggagacacctgcag
gacgagtcttcagaggagaggagagccaggaaacacaaaaagtcaaaaaagaaaaagaag
tccaaacataaatacagaatcagggaccacagaagtcaccaggattcctctgaagcaaac
tctgatagtgattcatggaaacacaagaaaaagaaaaaacacagaagtgacggttcagat
caggacaaacctcagcgctcccagtacgggaagcagaactccaggtctggggatgagtcg
gacagcagcaacaaggcatccaagagcaacgacttcagaggggtagatgtcaggacagac
agtcaaaaacagtatcccgaggagaaggaagaacagtcccataaagaaaagaattcccag
attgagagtggctattacacaagcagtgaacatcacagaggttaccggtcatctcagtca
gatgctgaaatgtataggtgtcctttaaatagagttcacttggaagcaaaggaaaaatct
gaaaatggagctgactgtcaatcttctctcagactggtgactgaaataggtaatcaatct
ggatgcaaggagtctgaaattgattcctcttgcagggacacagccaggtgcaaatttctt
ttgcaggcgagtgacaaaacatccgcaatagaggagactgctcactga
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integrated database retrieval system
