Polyodon spathula (Mississippi paddlefish): 121301141
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Entry
121301141 CDS
T07273
Name
(RefSeq) very low-density lipoprotein receptor-like
KO
K20053
very low-density lipoprotein receptor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121301141
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121301141
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
EGF_CA
SGL
cEGF
EGF
Motif
Other DBs
NCBI-GeneID:
121301141
NCBI-ProteinID:
XP_041086204
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Position
27:6919038..6924772
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AA seq
625 aa
AA seq
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MLCDGTVDCKDGSDELPDVCGRALCKADEFGCTSGRCVLAQFRCNGMDDCGDGSDEVGCP
LCPLGWFRCLDSEACHPETRRCDGVRDCPNGADEAAELCGTLSTPPRTCPSSDFQCGTGE
CIPQSWRCDRFSDCNDGSDEKECDRDECQEGNAGCSHLCVDLPWGFVCDCPEGMRLVRDT
QCEDIDECLEPDVCSQLCVNLNGTHRCECHQGYLKSPKTGECIARGREAMVVFSCDSGIR
LLDPSTGKYREISGSLAGAGAIAADIPGNALYWGAPKLGSIYRTAQEGAAVTTPVLNGVG
SPQGVAVDWVHRLLYWTDSLARSVNVASLDGDRRKVLIGGLSEPWGVAVQPLSGFLFWSD
AGTPARIERAGMDGRGRVTLVSSGVKRPVAIALDPTQPFLYWVDSQLHCISRVGLDGQHR
KMILESKDYLGRPFALAVFESRMFWSGDDQHSIYSASKLNGSDLRELVSNVSPRGLVLIH
PVLQPEGWNACAGERAVCEFLCVPAPPAHTGAPGFTCLEPGAQHLTQNSSTSLPPPPPPP
SPSLCCDAPGTDGTFFSILALIVVLCLLLIGCLVWWWRVEFSSTTSISLHESTFLKQSWD
PVEPQSWHETSEREDTFLRLEADID
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgtgacgggactgtggactgcaaggatggatctgacgagctcccagatgtctgc
ggcagggcactgtgtaaagcagatgagtttggctgcaccagcgggcgctgtgtcttggct
cagttccgctgtaacggcatggatgactgcggggatgggagtgatgaggtgggctgccct
ctctgccccctgggctggttccgctgcctggactctgaagcctgccatcctgagaccagg
cgctgtgacggggtccgtgattgtccaaacggggctgatgaagcagccgagctctgcggg
accctgtcgaccccccccagaacctgtcccagctctgatttccaatgcgggacgggggag
tgcatccctcaatcctggaggtgcgatcgcttctccgactgcaatgatgggagcgacgaa
aaggagtgcgaccgcgatgagtgtcaggaggggaacgccggctgctctcacctctgtgtg
gacctgccctggggcttcgtgtgcgactgtcctgaagggatgaggctggtgagggacacc
cagtgtgaggatatagatgagtgtttggagccggacgtgtgcagccagctctgcgttaac
ctgaacggtacccacaggtgtgagtgccaccaggggtacctcaaaagccccaaaacgggg
gagtgcattgcccgagggcgggaggccatggtggtgttcagctgtgacagtgggatcagg
ctgcttgatccgagcactgggaagtacagagagatctcggggagcctggcgggggctggg
gccattgctgctgacatcccgggaaacgcattgtactggggcgccccaaaactgggctct
atctacaggaccgcccaggagggggcagcggtgaccacgcctgtgctgaatggagtgggg
tcaccgcagggggtcgctgtggactgggtccacaggctgctctactggaccgacagcctc
gcccgttccgtcaacgtggcctcgctggatggagacagacgtaaggttctgattggtggg
ctgtctgagccgtggggcgtggccgtgcagccactgtctgggttcttgttttggtcagat
gctggcactcctgcaaggatcgagagggctggcatggacgggcgaggcagggtgactctg
gtctcctctggcgtcaagagaccggtcgctattgcactggaccccacacaacccttcctc
tactgggtggactcccagctgcattgcatctcccgggtggggctggacggacagcaccgc
aagatgattctggaatcaaaggactacctggggaggccctttgcactggctgtctttgag
agtcgcatgttctggagcggtgatgatcagcactctatctacagcgcttccaagctgaac
ggttctgacctgagggagctggtctcgaacgtgagccccaggggtctggttctgatccac
cctgtcctgcagccagagggttggaatgcgtgtgcgggagagagagctgtctgtgagttc
ctgtgtgtgcctgcaccccctgcacacacgggcgccccaggattcacctgcctcgaaccc
ggggcccagcatctcacccagaacagcagcacatctcttccacctcctcctcctcctcct
tctccttctctttgctgtgacgccccaggtaccgatggcactttcttcagcatcctggcc
ctgattgtggtcctgtgcctgctgttgatcggctgtttggtctggtggtggagagtggag
ttcagctccaccacatccatctctctgcatgagtccacattcctcaagcagtcctgggac
cccgtggagcctcagagctggcatgagacctcagagcgagaggacaccttcttgaggctg
gaagcagacattgattga
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