Polyodon spathula (Mississippi paddlefish): 121301263
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Entry
121301263 CDS
T07273
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121301263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121301263
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121301263
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121301263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
121301263
NCBI-ProteinID:
XP_041086375
LinkDB
All DBs
Position
27:complement(9238924..9262618)
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AA seq
692 aa
AA seq
DB search
MRPGALNYPSNGWGCDKPSNIHTSGDCSRRADDFKECLDTIYSAIHEAEFLAIDGEFSGI
SDGPSVSALTNGLDTPEERYQKLKKHSMDFLLFQFGLCAFKYSHAEAKYVIKSFNFYVFP
KPLNRSSPDIKFVCQSSSIDFLANQGFDFNKVFCSGIPYLNQEEERQLREQYEERRSQSN
GAGTPSFVSPNSSKGPVVIPEEHKAFIERVVEKVESLSNSAEQSSVQLEPCTGFQRKLIY
QTLNWKFSKGIHVETVETEKKERCILISKVDEDEKKRREQQKQEKEQGELADAVGFSRVI
HAISKSGKLVVGHNMLLDVMHTIHQFYCPLPEELNGFKEVTLCVFPRLLDTKLMASTHPF
KELILNTPLAELEKRLKEAPFKSPKVDSAEGFQSYNTASEQLHEAGYDAYITGLCFISMA
NFLGSFLSPPKPHISARSKLIEPFFNKLFLMRIIDIPYLNLSGPDLQPKRDHVLYVTFPK
EWKTSDLYQLFSAFGNIQVSWIDDTSAFVSLGQVDQVQIAVNTSRYAESYRIQTYAEYME
SRLEEKRAKRKSSEDSWRELESSRLKVQYTSALPAGSGFNSNNNEVAPGKRSMSPIQEEL
GSDEPEEGEIDRDGTSSWTSTAPAHSKKHKKIRTDPGKESTGPGNRLHRDRSPACVNRVC
FMFSMCAHMFCLFSAVQYFFFFSPWSLWFHRS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgagaccgggggccttgaactatccgagcaatggctggggctgtgataaaccatctaat
atccacacctcgggtgactgcagcaggcgggcagatgattttaaagagtgcctggatacg
atatacagcgcgatacacgaagctgagtttctagccatcgatggagaattttcaggaatc
agtgacggcccctccgtgagcgcattgacgaatggtctggacacgccagaagagcgctat
cagaaactgaaaaagcattccatggatttcctgttgtttcagtttggcctctgtgctttt
aaatacagccacgcagaagcaaaatacgtaattaagtcttttaacttttatgtttttccg
aagccgttgaacagaagctccccggatatcaagtttgtctgtcagagttcaagtatagac
tttctggccaatcagggatttgatttcaacaaagtgttttgtagtggtatcccctatctg
aaccaagaggaggagaggcagctcagggagcagtacgaggagcggcgctctcagtccaac
ggagcagggaccccgtccttcgtgtcccccaactccagcaaggggccggtcgtcattcca
gaggagcacaaagccttcatagagagagtcgtagagaaagttgaaagcttgtcaaacagc
gccgaacagtccagtgtgcagctggagccctgtactggatttcagaggaagctcatttat
cagaccttgaactggaaattttccaaaggcattcatgtagaaaccgtggaaacagagaag
aaagagcgctgcattttaatcagcaaagtggatgaggatgaaaaaaaaaggagagaacag
cagaagcaggagaaagaacagggagaacttgctgacgctgtgggcttctccagagtcatt
catgccatttccaaatcgggcaagctggtcgtgggtcacaacatgctgctagatgtcatg
cacaccatccatcagttttactgcccgctacccgaggagctgaatggttttaaagaagtg
acgttgtgtgtgtttcccaggcttttagacaccaaactcatggcaagcacgcatccattc
aaggagctcattctcaacacacccctcgcagagctggaaaagaggttaaaagaagcgcct
ttcaagtccccgaaagttgacagcgccgaggggttccagagctacaacactgcctcggag
cagctgcacgaagccggttatgatgcctacatcaccgggctctgcttcatctccatggcc
aacttcttgggttcgttcctcagccctcctaaaccacacatttctgccagatcgaagctc
attgagccctttttcaacaaactgttcctcatgagaatcattgatatcccctacctcaac
ctgagtggacctgacttgcagccaaagcgagaccacgtcctttatgtcacgtttcccaaa
gagtggaagacgagtgacctctaccagctcttcagtgccttcgggaacattcaggtgtcc
tggattgatgacacgtcagcgttcgtgtccctggggcaagtggatcaggtgcagatcgct
gtgaacaccagcaggtacgcggagagctaccgcatccagacctacgcggagtacatggag
agcagactggaggagaagagagccaagaggaagagctccgaggacagctggagggagctg
gagagcagcaggttaaaagtgcagtacacttctgcactgccagccggctccgggttcaac
agcaataacaacgaagtggctccggggaagagaagcatgagtcccatccaggaggagctg
ggttcggatgaaccagaggagggggagatcgaccgggacggaaccagcagctggaccagc
acagcgcctgcacacagcaagaagcacaaaaagatcagaaccgacccgggtaaggaaagc
acaggcccaggaaaccggctgcacagggatcggagccctgcctgtgtgaatcgagtgtgc
tttatgttctcaatgtgtgctcacatgttctgtttgttcagtgcagtacagtattttttt
tttttttctccttggagcctctggtttcacagatcctga
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