Polyodon spathula (Mississippi paddlefish): 121301273
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Entry
121301273 CDS
T07273
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121301273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121301273
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
RNases
121301273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Pox_B6
Motif
Other DBs
NCBI-GeneID:
121301273
NCBI-ProteinID:
XP_041086416
LinkDB
All DBs
Position
27:6705161..6715159
Genome browser
AA seq
1198 aa
AA seq
DB search
MLRTTGFFRGIDCPFINSPDNGINNNNDAKNGGEPCSRPYCHFRHCKPSSKESKGCISAQ
QEQGCDLYSPEVTRPAGQNGEESTGSDSVELEPSNLELELVNRAIEAVKSEVEREQKKLS
WLEDVAEIKDEAYNSLEYDPSSYRISAVRDYNPTPHSSKYTLDSDSKSKGNSLEYVPAAV
SKAAVKKAAPSALTCNKYTIDKTKPTTDLEYDPLSNYSARHLNKKNAKDLKRGRRSREVR
EEEGYVPTAKKPRRQTDFQKYDVGANFFESDEENGTEYRPSPISRLQRGSFSNDETGDSG
NREGKERAAQHGTEDTDSVKLGEQEGKSREMKESSKASDKKVKAEKVKNGEEKPSGRNNM
EGLKERGVKKEKGEEVKSSSSKEVAKKDRNGGKKENKSKGEDKINGKNRSKEKELKQEKG
QGGSSGKKEKHTLEGARKEKPKVSDSSCGKKGDGKSKASERGDRSKKDLSESKDLKNRKQ
GHKEKKTGSTESAKEGKKSSSTKEEGKRPQKIKLKQRTLSHVDLFGDESGDEDDPGQASS
FSKGDSFQGKRETSKRKASAFSSSEDEIEEATEEDDRDYSSLQNELDYEEDPMEECLRIF
NESNDVKMEDKGRQAKQAPSEPSVNGSTEDTLTTLFPGQKKRVSHFACKGDVEVTLKQPA
RPYRRATAQETCYKRIQMAQQQAVQLAVAAKTTTVAYAGEKRRIAHRPTLAAPAAKFGPV
EGRKAGSNVASPSGSGSSSLALKAHTPASFPSKTTSTAVQRRIAHTPTLKNLSSLKRPII
PTEFGAKVPTNVRQRYLNLFIDECLKFFSSEEGAFEKALAEEKMVYDRSSSRNIYLNVAV
NTLKKLRGQSTAPTSPTNKHPSVSKKSLSHEELLGGRLAAKTSFTLNLLGKPQEEDLTGA
TLYRKMKGYLMTEEQLQEHGYPRPNPDKPGGAIVHTASQKKILDPFTKVCCRCGSEYTVS
ANGNCVRREECTFHWGRLRRQRAPDGWETQYSCCSGAVGSTGCQVAKQHVQDARKENLDG
YVRTFDKPTSQEGNPGVYALDCEMCYTKQGLELTRVTVVNSDLKVIYDTFVKPDSKVIDY
NTRFSGVTEEDLENTTITIRDVQAVLLSMLSADSILIGHSLESDLFALKLIHSRVVDTAI
VFPHRLGLPYKRALRTVMAEYLKRIIQDNVEGHDSSEDASACMELMIWKIKEDAKVKR
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaaccacgggctttttccgagggattgactgtccatttattaacagccctgat
aatggtattaataacaataacgatgcaaagaacggaggggagccctgcagcagaccttac
tgtcacttcagacactgcaaaccgtcttccaaggagagcaagggatgtatctcagcgcag
caggagcaaggctgcgacctgtacagccctgaagtcacgaggccggcgggacagaatgga
gaggagtcgactggaagcgactccgtggagctggagcccagcaacctagagctggagctg
gtgaaccgggccattgaagctgtcaagagtgaagtggagcgggagcagaagaagctgtcc
tggctcgaggacgtcgctgagatcaaagacgaagcttacaattctcttgagtacgacccc
agtagctatcggatcagtgccgtcagggattacaaccccaccccacactctagcaagtac
acactggactccgatagtaagtctaaaggcaactcactggaatacgttcctgcagctgta
tccaaggcagcagtcaaaaaggcagcaccctcagcgttgacttgtaataaatacactatt
gacaaaacgaaacccacaactgatctggagtatgaccctttgtctaactactcagcgagg
cacttgaataaaaagaacgccaaggacctgaaaagaggcaggaggagtcgggaagtgaga
gaagaggaaggctacgtcccaaccgccaagaaaccccgtcgccaaacggacttccagaag
tatgacgtgggggccaacttttttgaatcggatgaagaaaatgggacagaatatcgtccc
agtcccatcagccgtctgcagcgtgggagcttctcgaatgacgaaacgggcgacagcggg
aatcgggaggggaaggagagagccgcgcagcacggcacggaagataccgatagcgtgaag
cttggggagcaggagggaaaaagcagagagatgaaggagagcagtaaagcgtctgacaaa
aaggtgaaagcggagaaagtcaagaatggagaggagaaaccctccggcagaaacaacatg
gagggtttaaaggagagaggagtgaagaaggagaaaggggaggaagtgaagtcgtccagt
tctaaagaggtggccaagaaagacagaaacggtgggaaaaaggagaacaaaagcaaaggc
gaagacaaaataaatggcaaaaacagaagtaaagagaaggaactcaagcaggagaagggt
cagggaggcagcagcggcaagaaggagaagcacactctggagggggcgagaaaggagaag
ccgaaggtctcggacagcagctgtggaaagaagggcgacgggaaaagcaaagcatcggag
aggggagacaggagcaagaaggacctctcagaatctaaggatctgaagaacaggaagcag
gggcacaaagaaaagaaaacggggagcacagaatcggcaaaggaagggaaaaagagcagc
tcgacaaaggaagaaggaaagaggccccagaaaataaaattgaaacagaggacgctgagt
cacgtggatctgtttggcgacgagagtggagatgaggacgacccaggtcaggctagcagc
ttcagcaaaggggattccttccagggaaagcgtgaaaccagcaagcggaaagcctctgcg
ttctcctcttcagaggacgagatcgaggaggcgacggaggaggatgaccgggattactcc
agcttgcagaatgaactggattacgaggaggacccaatggaagagtgcctgaggatattt
aacgaatcgaatgatgtgaaaatggaggacaaggggaggcaagccaaacaggcgcccagc
gagccctccgtgaacggaagcacagaggacactttaacaacgctcttcccgggacagaag
aagagagtttcccactttgcatgcaaaggagacgtggaagtgaccctgaagcagcccgcc
cgaccctatagaagggccacggcccaggagacctgctacaagcgcatccagatggcacag
cagcaggcagtacagctggctgtggcagcaaaaacaactaccgtggcatacgcaggagag
aagaggaggattgctcatcggccaacactggctgcaccagctgcgaaattcggcccagtg
gaaggaaggaaagctggcagcaacgtggcctcacccagcgggtctggatccagttccctg
gctctaaaagctcacacgcctgcttccttcccatccaagaccaccagcactgcagtgcag
aggagaatagcgcacacccctactttgaagaacttatcttctttaaagaggcccatcatt
ccgaccgagtttggtgccaaagtcccgactaatgtccggcagaggtatctcaatctcttc
attgacgagtgcctcaagtttttctcatccgaagaaggagcttttgagaaggccctggca
gaagagaagatggtgtatgacagaagcagcagccgcaatatctacttgaacgtggcggtg
aacacactgaaaaagctccggggtcaaagcactgcccccacatcccctaccaacaagcat
cccagtgtgagtaagaagagtctctcccacgaggagctgctgggagggaggctggctgcc
aagaccagcttcaccctgaacctcctggggaaaccgcaggaggaggacctcacaggtgcc
acgctgtacaggaaaatgaaagggtacctcatgacagaggagcagcttcaggagcatgga
tacccccgaccgaaccctgacaaaccaggaggagcgatcgtccacacagcctctcagaag
aaaatccttgatcccttcaccaaagtgtgttgccgctgtgggtcggagtacacagtctct
gcgaatgggaactgcgttcgaagggaggagtgtaccttccactgggggaggctgcggaga
cagagggctcctgatggatgggaaactcagtacagctgctgctctggagcggtggggtcc
acaggctgtcaggtagccaagcaacacgtccaggacgcgcgcaaagagaatctggacggg
tatgtgaggacattcgacaaacccacctcacaagaggggaaccctggcgtctacgctctg
gactgtgagatgtgctacacaaagcaaggtctggagcttaccagggtcacggtggtcaac
tccgatctgaaagtgatctacgacacgttcgtcaaacctgacagcaaagtcatagattac
aacaccaggttttcaggggtgactgaagaggaccttgaaaacaccaccataacaatccgc
gatgtccaggccgtgctgctcagcatgctcagcgctgactccatcctgattggacacagc
ctggagagcgacctgtttgcactgaagctgatccacagcagggtggtggacactgcaata
gtcttccctcaccggctgggactgccatacaagcgagcccttagaactgtcatggcagaa
tacctcaagcgcatcattcaggacaacgtggaaggacacgattccagcgaagacgcctcc
gcttgcatggaactcatgatctggaaaatcaaagaagatgctaaagttaagagatga
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integrated database retrieval system
