KEGG   Polyodon spathula (Mississippi paddlefish): 121301280
Entry
121301280         CDS       T07273                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL-like
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121301280
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pspa01009]
    121301280
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pspa03021]
    121301280
Protein phosphatases and associated proteins [BR:pspa01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     121301280
Transcription machinery [BR:pspa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     121301280
    Little elongation complex (LEC)
     121301280
SSDB
Motif
Pfam: ELL Occludin_ELL UBR1-like_wing Seryl_tRNA_N
Other DBs
NCBI-GeneID: 121301280
NCBI-ProteinID: XP_041086453
LinkDB
Position
27:complement(6058624..6852630)
AA seq 628 aa
MAALQEERSYGLSCGRLGNGSSVSVFHVKLTDSALRAFEGYQNSKSSLSNRPSIRFTGKQ
GQIAIPRPECLNELRTFSFYLSNVGRDSPQGSFDCMQQYVTRDGSIQLDCLGGIQDKITV
CATDDSYQKARQSMAQVEEETRSRGAIVIKPGGRYVGKKVQIRKPAPGNIDVAPTRRQAR
PVNMASTLKKGSSQPSAAPARPFRERLIHLLALKPYRKAELLLRLQKDGLPQQDKDSLDS
LLQQVANLNGRDGTYTLKGLMFKEVQKDWPGYCEGDQQLLKRILVRKMCQPQSSLGVAGE
TPASPPKEHSNSASPSQKRPAVDFIDPLANKKPRISHMTSKAQGALNGKVGSSNGKDSAP
GVPAPLLADPVSSSSHLHRLEIPRPYDPLSDVSNDSSHNGRDCEGQEAAAAERLSHPPAP
SMGLPAQPSEATFPSAAAGAPASAPGATSASLHGKSKKKSKKHKDKEKSKERSVEPKRGC
EFITEAQGSGVPSSTDLNGACSNSSVPTSTSEMPDYLLKYSLIASQDQRQSYKNDFNAEY
NEYRGLHARIESITRQFTVLDTELKQLEQGTETYKTIHNQILQEYRKIKKSNPDYSQEKN
RCEYLHSKLAHIKKLIAEYDHQHLQNWH
NT seq 1887 nt   +upstreamnt  +downstreamnt
atggcggcgctgcaggaggagcggagctacgggctgtcctgcgggagactcggcaatggc
agcagcgtctccgtgtttcacgttaaactgactgacagcgccctgagggcctttgagggt
taccagaacagcaagagctccttgtctaatcgcccgtcgatccgattcactgggaagcag
gggcaaatcgcaatccccaggccggagtgcctgaatgagcttcggaccttcagcttctac
ctgtccaacgtgggccgggacagcccccaggggagcttcgactgcatgcagcagtatgtc
accagggacgggagcattcagcttgactgcctgggcgggatacaggataaaatcactgtg
tgtgccacggacgactcctatcagaaagcccggcagagcatggcacaggtggaggaggag
acccggagccgtggggcaatcgttatcaaaccgggagggagatacgtgggtaagaaggtg
cagatccggaagccggcccctggcaacatcgacgtggccccgacgaggaggcaggcccgg
ccggtgaacatggccagcaccctgaagaaggggagcagccagcccagcgcggccccagcc
aggcccttcagggagcggctcatacacctgctggcactgaagccctacaggaaagcagaa
ctcctcctgcgcctgcagaaggatgggctccctcagcaggacaaggactcgctggacagc
ctcctgcaacaggtggcgaatctgaatgggagggacggcacctacacgctgaagggcttg
atgtttaaagaagtgcagaaagactggcctggatactgcgagggagaccagcagctgctg
aagaggatactggtcaggaagatgtgccagccccagagcagcctgggtgtagccggggag
acccctgcaagcccacccaaagagcacagcaactccgcctctccctctcagaaacgcccc
gctgtggacttcatcgacccgttggccaataagaagccccggatctcccacatgaccagc
aaagcccaaggcgcgttgaacgggaaggtgggctcctccaatgggaaggatagtgctcct
ggggtcccggcgccactcctggctgatccggtgagctccagctcccacttgcacaggctg
gagattcccaggccctacgaccccctctcggacgtcagcaacgactccagccacaacggg
cgggactgcgagggacaggaggcagcggcagcagagcggctgagccaccccccggccccc
agtatggggctccctgcccagcccagcgaagcaaccttccccagcgccgcggccggagcc
cctgcctctgcccccggagccacctccgcatccctgcacgggaaatccaagaagaaatca
aagaagcacaaggacaaggagaaatccaaggagaggagcgtggaaccgaagagaggctgt
gaatttattacagaggcacaagggagcggtgttccaagcagcacggacctgaatggggcg
tgcagcaattctagtgttcctacatccacatcggagatgccagactatttattgaaatac
tcgctgatcgcatcccaagaccagcggcagagttacaagaacgacttcaacgcagagtac
aacgagtacagaggcctgcacgccaggatagagagcatcacccggcagttcactgtgctg
gacacagagctgaaacagctagagcagggcaccgagacgtacaagacaatccataatcag
atcttacaagagtatcggaaaattaaaaagagtaatcccgattacagccaagagaagaac
cgctgtgaatacctgcacagcaagctggctcacataaagaaactgatagcagagtacgac
catcagcacctgcagaactggcactag

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