Polyodon spathula (Mississippi paddlefish): 121301326
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Entry
121301326 CDS
T07273
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121301326
03015 mRNA surveillance pathway
121301326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121301326
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121301326
5.6.2.5 RNA 5'-3' helicase
121301326
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121301326
mRNA cycle factors
Common to processing body (P body) and stress granule
121301326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121301326
NCBI-ProteinID:
XP_041086536
LinkDB
All DBs
Position
27:complement(1660381..1690683)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGHTQSQLDSQVNG
PDGVLQNGAVDDAAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIANFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMSTAMYDAREALIPGSVYDRSNQGRPSNMYFQTHDQIGMIGAGPSHVAAM
NIPIPFNLMMPPIPPPGYFGQANGPAAGRGALKGKAGRGGRQRNRGIGNQGNSQCNLPNS
QASQDAASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcagactctcacctttctggacacggaggaa
gcggagctgctgggggctgacacgcagggctcggagttcgagtttaccgacttcaccctg
ccgagccagacccagacccaggggcacacgcagagccagctggacagtcaggttaatggt
cctgatggagttctgcagaatggggcagttgatgatgcagctaaagcaagccaacttctt
gctgaactgaattttgaagaagatgaggaggatacctattacaccaaggaccttccagtg
catgcctgcagctactgtggaatacatgacccggcctgcgtggtttactgcaataccagt
aagaagtggttctgtaatggacgaggaaatacttcgggcagccacattgtgaaccacctt
gtcagagcgaaatgtaaagaagtaactctgcataaagatggcccgcttggagagactgtc
ttggagtgttacaactgtgggtgtcgcaacgtttttcttttgggcttcatccctgccaag
gctgattctgttgttgtactgctgtgcagacagccgtgtgccagtcaaagcagcctgaag
gatatcaactgggacagttctcagtggcagcccttgatccaagaccgctgcttcctttcc
tggctggtaaagattccttctgagcaggagcagctgagagcgaggcagatcacagctcag
cagatcaacaaactggaggagctctggaaggaaaacccttcagccactcttgaggatctg
gagaaacctggagtggatgaggagccacagcatgttctactccgctatgaagatgcctat
cagtaccagaacatcttcggaccgcttgtcaagctggaggctgactatgacaagaaactc
aaggaatctcagacacaggataatataactgtgaggtgggacctgggtctcaacaaaaag
cgaattgccaacttctctttgcccaagactgactcaggtgacatgcgtttaatgcaagga
gatgagatttgtctgagatacaaaggagacctggctcccttatggaaaggaattggacat
gtgatcaaagttccagacaattatggagatgaaattgctattgagttgagaagcagcgtt
ggtgcccccgtcgaagttcctcacaatttccaggtcgactttgtttggaaatcaacttcc
tttgacaggatgcaaagtgctctgaagacctttgcagtggatgagacctctgtttctgga
tacatttaccataaactgctggggcacgaagtggaagatgtcatcataaagtgtcagctg
ccgaagcgcttcactgcccatgggctcccagaccttaaccattctcaggtttatgcagtg
aagactgtgcttcagcgtcctctcagccttattcagggccccccagggacaggaaaaact
gttacatctgctaccattgtgtaccatctggccaggcagggcaatggaccagtgcttgtg
tgtgctccaagtaacattgctgtggatcagctgactgagaaaattcaccagactggactt
aaagttgtaaggctttgtgctaagagcagggaagccattgattctcctgtatctttcttg
gcattgcacaaccagatccgtaacatggatagtatgcctgaacttcagaagttgcaacag
ctgaaagatgaaactggggaattgtcctctgcagatgagaagcgctatcgagcattgaag
cgcacggctgaaagggagcttctgatgaatgctgatgtgatctgctgcacctgtgttgga
gccggggacccacgtttagctaaaatgcaattccgctcaattctgattgatgagagtacc
caagctactgaacctgaatgcatggtgcctgtggtgctgggagcaaaacagttgatcctt
gttggtgatcattgccagctaggtcctgttgtcatgtgtaagaaagcagccaaagcaggt
ctgtcccagtctctgtttgaacggctggtggtgctggggatccgtcccattcgtttgcag
gtacagtatcgtatgcacccagcactcagcgcctttccatccaacatcttctatgagggt
tcccttcagaacggagtcactgcagctgaccgcattaagaaggggtttgacttccaatgg
ccacagccagacaagcccatgttcttctatgtaactcaaggacaggaagaaattgcaagc
tcaggaacttcttacttgaacagaactgaagctgctaatgtggaaaagatcaccacaaag
cttctgaaagcaggagccaaaccagaccagattggaattattacgccctatgagggtcag
cgctcttacttggtgcaatacatgcagttcagtggctctctgcacactaaactttatcag
gaggttgagattgccagtgtggatgctttccaaggacgtgaaaaagacttcatcattctg
tcttgtgtcagagctaatgaacatcagggtataggattcttgaacgatcccaggcgtctc
aatgtggctcttactagagcaaggtatggtgtgattattgttggcaaccccaaggctttg
tccaagcagcctttgtggaaccaccttctgaactattacaaggagcagaaggtcctggtt
gagggaccgctgaacaatctgcgagagagcctcatgcagttcagcaagcctcgcaagctg
gtcaatactataaatccaggagcacggtttatgagtacagctatgtatgatgccagggaa
gcgctcatcccaggatcagtgtacgatcggagcaaccaggggcgcccttcgaatatgtac
tttcagacccacgatcagatcggaatgattggtgctggtcccagccatgttgctgcaatg
aacattcccatccccttcaatctcatgatgccacccatacctcccccaggatacttcggc
caggctaatggcccggcagcaggcaggggggcattgaaggggaaggctggccgcggagga
cgccagagaaatcgtggcattggcaatcagggaaatagccagtgcaacctgcctaacagc
caggccagtcaggatgctgcgtcccagccgttttcacaggggccgctgactcagggctac
atctctatgagccagccatctcaaatgagccagccaggcctttctcagccagaactgtca
caggacagttatttgggtgatgaattcaagtcccagattgatgtggcgttgtcacaggat
tctacttaccagggtgaacgtgcttaccaacatggcggggtgactggactgtcacagtac
tag
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integrated database retrieval system
