Polyodon spathula (Mississippi paddlefish): 121301460
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Entry
121301460 CDS
T07273
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121301460 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121301460 (cpsf4)
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121301460 (cpsf4)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121301460 (cpsf4)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121301460 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCHC
zf-CCCH_2
zf-CCCH_4
Nab2-like_zf-CCCH_
zf-CCHC_3
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
121301460
NCBI-ProteinID:
XP_041086817
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All DBs
Position
27:9217856..9223616
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AA seq
279 aa
AA seq
DB search
MQDLLATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACIKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHSRRYICVNYLVGFCPEGTACKHVHPRFELPMGTMEQPP
LPQQPPMQQKARNLLNFQQQNVTQMIQRSSSSLIQLTSTNTTSNQQRMPQGFGAMQYHGN
STGSRGPRPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctgctcgccactgttgatcacattaaattcgatctggagatcgctgtggag
cagcagctgggagcacagcctctgccgtttcctggcatggacaaatctggggccgctgtt
tgtgaattcttcctgaaagcagcatgtataaaaggaggcatgtgtccattccgccacatc
agtggagagaagacggtggtgtgtaagcactggctgagggggctgtgtaagaaaggagac
cagtgcgagtttctgcacgagtatgacatgaccaagatgccagagtgttacttctactcc
aagtttggagagtgcagtaataaggagtgcccgttcttgcacattgaccccgagtcaaaa
atcaaagactgcccgtggtacgaccgaggattctgtaaacatggtcccctatgcagacac
aggcactctcgaagatatatctgcgtcaattacctggtcgggttctgtcctgaagggacc
gcctgtaaacacgtgcatcctcggtttgagttgccaatgggaactatggaacaaccgccg
ttgcctcagcaaccgcccatgcagcagaaagcacggaaccttctgaattttcagcagcaa
aacgttactcaaatgattcagaggtcatcgtcctccttgattcagctcacaagcaccaac
accacctccaaccaacagaggatgccgcaggggtttggagccatgcaataccatggcaac
agcacaggaagcagagggcccaggcccctggagcaggtcacctgttacaagtgcggtgag
aaggggcactacgcaaaccgatgtaccaaagggcacctggcattcctgagtgggcagtag
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integrated database retrieval system
