Polyodon spathula (Mississippi paddlefish): 121301588
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Entry
121301588 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase RNF126-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121301588
04121 Ubiquitin system [BR:
pspa04121
]
121301588
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121301588
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
121301588
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121301588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
zf-RING_11
Zn_ribbon_19
zf-rbx1
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
zf-Nse
zf-RING_16
zf-RING-like
HypA
C1_2
EHMT1-2_CRR
DZR
DZR_2
DUF3678
PHD
Motif
Other DBs
NCBI-GeneID:
121301588
NCBI-ProteinID:
XP_041087036
LinkDB
All DBs
Position
27:complement(3582390..3590300)
Genome browser
AA seq
315 aa
AA seq
DB search
MAEAPTRSGRFFCHRCSAEISPHLPDYTCPRCESGFIEELPEERSTENGSTSSASTSDQN
RHQFETLDQHMFTFPPGYGQFTLGIFDENFEFGSGPPSEDNRETENRRERELASRQRYGA
RQPRARHMARRQTGRHEGVPTLEGIIQQLVNGIIAPTAIPNIGLGPWGMLHSNPMDYAWG
VNGLDAVITQLLNQFENTGPPPADRDKIKSLPTVQVTEEHVGSGLECPVCKEDYTAGESV
RQLPCNHMFHNDCIVPWLEQHDTCPVCRKSLSGQNTATNPPGLSGMNFSSSSTSSSSSSS
SSSSSPGNENTTNNS
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagctcccactcgatccggtcggtttttctgtcaccgctgctctgcggagatc
agcccgcatctcccggattacacctgcccaaggtgtgagtctgggtttattgaagaatta
cctgaagagagaagcactgaaaatggttccacctcttcagcctctaccagtgatcaaaat
cggcaccagtttgagaccctggaccagcacatgttcacctttccccctggctatggacag
tttacgttggggatttttgatgaaaactttgaattcggttcagggccaccctcggaagac
aacagggagacagagaaccgcagggagagggagttggcgtcaaggcagcgttatggcgcc
aggcaacccagggcgcggcacatggcaagacggcagacagggaggcacgagggggttcct
actttagaaggaattatccagcagttagtgaatggaattatagcacctacagccattcca
aacataggacttggaccttggggtatgttgcactcaaacccaatggactatgcatggggg
gtgaatggacttgatgcagttataacacagttattaaatcagtttgaaaacaccggcccc
cctccggcagacagagataaaattaagagcctccccactgtgcaggttactgaagaacac
gtaggttcaggtctagaatgtcctgtctgtaaagaagattacaccgcaggagaaagtgta
aggcagctcccgtgcaatcacatgtttcacaatgattgtatagtaccttggcttgaacag
cacgacacgtgtccagtttgcaggaaaagcttaagtggacagaacacagctacaaatccg
cctgggttatcagggatgaatttctcctcatcctccacctcctcctcttcctcctcctcc
tcttcctccagttctcccggcaacgagaacacgacgaataactcctaa
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