Polyodon spathula (Mississippi paddlefish): 121301599
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Entry
121301599 CDS
T07273
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03440
Homologous recombination
pspa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121301599 (top3a)
03460 Fanconi anemia pathway
121301599 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121301599 (top3a)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121301599 (top3a)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
121301599 (top3a)
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Topoisomerases
121301599 (top3a)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
121301599 (top3a)
FA (Fanconi anemia) pathway
121301599 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
DUF6261
Motif
Other DBs
NCBI-GeneID:
121301599
NCBI-ProteinID:
XP_041087065
LinkDB
All DBs
Position
27:9160395..9169188
Genome browser
AA seq
1023 aa
AA seq
DB search
MIFRRGCLTLRAGLRLSATVQEKFSWFCRRVSTEDMRRAQIKKVLCVAEKNDAAKGIAEI
MSNGVMRRKEGLSRFNKIYEYEYHWFGQNVTVSMTSVSGHLLGLEFKAPFQKWHSCNPVV
LFDAEVEKYCPDNYVDIKRTLEREVRQCQALVIWTDCDREGENIGFEIIEVCKAVKQNLQ
VFRARFSEITPNSIRNACQNLSEPDQNVSDAVDVRQELDLRIGASFTRFQTLRLQKIFPT
VLSDQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVTHKMEDCEVDFSWKRNRLFH
HTACLVLYQMCMENPVATVIDVSSKPKSKWRPLPLDTVELEKLASRKLKISAKETMKIAE
KLYTQGFISYPRTETNIFPKDLNLTPLVEQQTQDAHWGSFAQGILERGGPTPRNGTKTDQ
AHPPIHPTKYTSGLQGNEQRLYEFIVRHFLACCSQDAQGQETTVDIDIAQERFATHGLMI
IARNYLDVYPYDKWYAKVIPVYERGSQFQPTTIEMLDGETGPPQLLTEADLISLMEKHGI
GTDATHADHIETIKSRMYVGLTPDQRFLPGELGMGLVEGYDSMGYEMSKPDLRAELEADL
KMICEGRKDKFTVLRQQVQNYKQVFVEAVRKAKKLDQALSSYFGEAREFTQQEEIQMEIP
LPIRKCPQCSRDMVLKKKKDGKGFFLSCMGYPDCKAAVWFPESVLEVSRDESVCPTCRPQ
PVQRLKFKFKRGSLPPAMPLEFVSCIGGCDEMLREILDLKYLRGGGGTPQTNPQSGSYLR
NNQPHNQPGRPDNACSRQPPRSKRPAVVVSAPHPVQAARGPAGENAVVCNCAQDAIILTV
RKEGPNQGRQFYKCNTGSCNFFLWADQQQEEGHGSAGGRGFSNPPRSAARPTPGFRGSAG
PSSSAIGRPGDNSSFSGGGGGDATVCSCNEPAVTRTVMKDGPNRGRPFHTCPKPREQQCG
FFQWADENVPPGGGLDSAPQSGGQKGKRQGGTTSTKGPASKRQMTCGVCHQPGHNRTTCP
QNK
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgatctttcgacgcggatgcttaacattacgcgctggattaaggctgtcagcaacagtc
caggaaaagtttagctggttctgtagacgagtttcgactgaagacatgcgacgagcccag
ataaagaaagtgctgtgcgtggccgaaaagaacgatgcggccaaagggatcgcagagatc
atgtctaacggggtgatgcgaaggaaagaaggattgtccagatttaataaaatctacgaa
tatgagtatcactggtttgggcagaatgtcactgtatcgatgacctcagtatcgggtcac
ctcctggggctggagttcaaagctccgtttcagaagtggcacagttgcaaccctgtcgtc
ctgtttgacgcagaagtggaaaaatactgcccagacaactatgtggatatcaagaggacc
ctggagagagaggtgaggcagtgccaggctctggtcatctggacagattgtgatcgtgaa
ggagagaacattggctttgagatcattgaagtctgtaaagcagtgaagcagaatttgcag
gtgttccgagcccgcttctcagagatcacccccaactcgatcaggaatgcctgccagaac
ctatcggaaccggaccagaacgtcagcgatgccgtggatgtcaggcaggagttggacctt
cggatcggggcctcgttcaccaggtttcagactctgaggctgcagaagatcttccctacc
gtgctctcggaccagctcatcagctatggcagctgtcagtttcctacactgggctttgtg
gtggagaggtttaaagccattcaggcttttatcccagagacattttacaaaattaaagtg
acccacaagatggaggactgcgaggtggatttcagttggaaaagaaaccgcctcttccac
cacactgcctgcctagtcctgtaccagatgtgtatggagaatcctgttgccacggtcatt
gatgtgtccagtaaaccaaagagtaaatggagacctctaccccttgacacggtggaactt
gaaaagctggcttcccgtaagctgaaaataagtgccaaggagaccatgaaaatagcagaa
aagctgtacacacaagggtttatcagctatccccgtactgagacgaacatcttccccaaa
gacctcaacctcacccccctggtggagcagcagacccaggatgcccactgggggtccttc
gcacaggggatcctggagcggggcgggccgaccccgcgcaatgggaccaaaacagatcag
gcccaccctcccattcaccccacgaaatacaccagcggcctgcaggggaacgagcagcgg
ctgtacgagttcatcgtccgacacttcctggcttgctgctcccaggatgcacaggggcag
gaaaccacggtggacattgacatcgcacaggagaggtttgcaacgcacgggctaatgatc
atcgccaggaactatctggatgtgtacccttacgacaagtggtatgcgaaggtgatccca
gtgtacgagcgagggtcccagttccagcccaccaccattgagatgctggacggagagaca
ggcccaccacagctccttactgaggctgacctcatctcactcatggagaagcacggcatt
ggcactgatgccacgcacgcggaccacattgagactatcaagtccaggatgtacgtgggg
ctgactccggaccagaggttcctgcctggcgagctggggatgggactggtggagggctac
gattcaatgggctatgaaatgtccaaaccagacctgagagctgagcttgaagcggacctg
aagatgatctgtgaagggaggaaggacaagttcactgtcctgaggcagcaggtccagaac
tacaagcaggtctttgtagaagctgtgaggaaggcaaagaagttggatcaggcgctgtcc
agctacttcggagaggcgagagaattcacccaacaggaggaaatccagatggagattcct
cttcccatcaggaagtgtcctcagtgcagccgggacatggtcctcaagaagaagaaagat
gggaaagggttcttcctgtcctgtatgggctaccctgactgtaaggctgcagtgtggttt
ccggagtctgttctggaggtcagcagagatgaaagtgtttgtcctacatgccgaccacag
cctgtgcaaaggttgaaattcaagttcaagagaggcagcctgccccccgcgatgcctctg
gagtttgtgagttgcatcggaggctgtgacgagatgctgagagagatcctggacctgaag
tatttacgaggaggaggaggtactcctcaaacgaaccctcaatcgggcagctatctgcgg
aacaaccagcctcacaaccaaccgggccgccccgataacgcatgcagcagacaacctcct
cgatccaaaagaccagcggtcgttgtgagcgcccctcatccagtccaggcagctcggggg
cctgctggagaaaacgccgttgtctgcaactgtgcacaggatgcgatcatcctgactgtg
cgcaaagaagggcccaaccagggccgccagttctacaagtgcaacacagggagttgcaac
ttcttcttgtgggctgaccagcagcaggaggagggtcatggaagtgctgggggcaggggg
ttctccaatcccccccggtcagctgctcgacccacaccagggttcagaggcagtgctggt
cccagctccagtgccattgggcgtccaggtgacaacagcagcttttcgggtgggggcgga
ggtgatgctacggtgtgcagttgtaatgaaccagcggtgacgcggacagtaatgaaggac
gggcccaacagggggcgcccattccacacttgccccaaacccagggaacagcagtgtggc
ttcttccagtgggcggatgagaacgtgcctccaggtggtggattggattctgctccccag
tctgggggacagaagggtaaaagacaaggtggcaccacctctactaaaggacccgcatcc
aagaggcagatgacgtgtggagtctgccaccagccgggccacaacagaaccacctgccca
cagaacaaataa
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