Polyodon spathula (Mississippi paddlefish): 121301642
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Entry
121301642 CDS
T07273
Name
(RefSeq) fibrillin-2-like
KO
K23342
fibrillin 2/3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121301642
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121301642
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121301642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
FXa_inhibition
EGF
TB
hEGF
EGF_3
Fibrillin_U_N
Plasmod_Pvs28
EGF_FBN_1st
EGF_MSP1_1
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
121301642
NCBI-ProteinID:
XP_041087137
LinkDB
All DBs
Position
27:complement(4413699..4466077)
Genome browser
AA seq
2885 aa
AA seq
DB search
MGARWLSNLLLGWTAVFWAASPSAYGQDPFQASRFSSGPDEREIANRVRRRGQESLRGPN
VCGSRFHSYCCPGWKTLPAGNQCIVPICRSTCGEGFCSRPNMCTCSNGQLSPGCGSQGVQ
SCNVRCMNGGSCNDDSCVCQKGYSGTHCGQPVCENGCQNGGRCIGPNRCACVYGFTGPQC
ERDYRTGPCFTQVNNQMCQGQLSGIVCTKTLCCATIGRAWGHPCEMCPAQPHPCRRGFIP
NIRTGACQDVDECQAIPGLCQGGNCINTVGSYECKCPAGHKQSETNQKCEDIDECSTISG
VCDGGECTNTAGSYVCTCPRGFITSSDGTRCMDQRVGACFSSLANGRCAGEQSGQYTKMQ
CCCETGRCWAAVQIPEMCPVRGSDEFHRLCIAGVPHGGGSNGGFPQIPNFNYNNGPGRGG
NGGYMDQRGNGGNGGNAGSRGNGLPSSSIGTATLNQTIDICKHFTNLCLNGRCIPTPSSY
RCECNMGFRQDVRGECVDVDECTSNPCVNGDCVNNPGSYHCKCHEGYQSTPTKQACVDID
ECIMNGVMCRNGRCVNTDGSFQCICNAGFELTPDDKNCVDHDECATTNMCLNGMCINEDG
SFKCICKPGFVLAPNGRYCTDIDECQTPGICMNGRCINSEGSFRCECLPGLAIDVDGRVC
VDTHMRSTCYGGIKKGTCNRPFPGAVTKSECCCASQEHGFGEPCQPCPARNSAEFQALCS
SGIGITADGRDINECALDPDICQNGMCENLRGSYRCICNTGYESDPSGKNCIDIDECAVN
RLLCDNGLCRNTPGSYTCTCPKGYVFRPDSETCEDVNECESSPCVNGVCRNTAGSFNCEC
SHGSKLDSTNTICVDSMKGTCWLNINDGRCEVNINGATLKSECCSTLGAAWGSPCDRCEI
DTACPRGYARMKGVVCEDVNECEVFPGVCTNGRCVNNPGSFTCVCPEGLTLDGTGRTCVD
VRVEQCYMKWEEDECVEPLPGKYRVDMCCCSVGAAWGIDCEACPSPGTQEYETICPRGPG
FANRGDVLSGRAFYKDVNECKVFSGLCSHGTCRNTIGSFRCRCSSGFALNMEERNCTDID
ECRISPDLCGHGACVNTPGSFECECFEGYESGFMMMKNCMDIDECERDPLLCRGGTCINT
DGSYECTCPLGHELTPDGTSCVDVNECELSDNLCRNGRCVNMIGTYQCSCDPGYQATPDR
QGCVDIDECTIMNGGCDTHCTNSEGSYECSCAGGYALMPDKRTCADIDECEDNPDICDGG
QCTNIPGEYRCLCFDGFMSSMDMRTCIDVNECDLNPNICLHGDCENTKGSFICHCQLGYF
VKKGTTGCTDIDECEIGAHNCDMHAACVNVPGSFKCRCRDGWVGDGLKCVDVDECATEEH
NCNANANCHNTPGSYRCACKDGFSGDGFFCSDVDECADNVNLCENGQCLNAPGGYRCECE
MGFTPTEDSKACQDIDECTFQNICVFGTCQNLPAMFRCICDDGYELDRSGGNCTDVNECA
DPVNCINGLCVNTPGSYLCNCPPDFELNPTGVGCVDTRVGNCFLDTLTRGDGGLSCSAEI
GVGVTRASCCCSLGGAWGNPCELCPLVNSTEYKTLCPGGEGFRPNPITVILEDIDECQEL
PGLCQGGNCVNTFGSFQCECPAGYHLNEETRICEDIDECTVHIGICGPGTCYNTLGNYTC
VCPPEYMQVNGGNNCMDMRKSVCYRNFNDTCENELSFNMTKKMCCCSYNVGKAWNKPCES
CPTPATSEYQLLCGNQAPGFIIDIHTGKPIDIDECREIPGICANGVCINQIGSFRCECPM
GFSYNNILLVCEDIDECNNGDNLCQRNANCINIPGSYRCECSPGFKLSPSGACVDRNECQ
EIPNACSHGECIDTQGSYRCLCHNGFKATADQTMCMDIDECDRQHCGNGTCKNTVGSYNC
LCFPGFELTHNNDCMDVDECTALLGQVCRNGQCINNLGSFQCLCQEGYELTADGKNCVDI
NECVSFPGTCSPGTCQNLDGSFRCICPPGYEVQNDNCNDINECEEEPNICLFGSCTNTPG
SFQCICQPGFVLSDNGRRCFDTRQSFCFTRFDAGKCSVPKAFNTTKDKCCCSTMPGEGWG
DPCDLCPQEGDAFHALCPYGHGTIIGKGNTREDVNECLDNPGICVNGICINTDGSFRCEC
PFGYSLDYTGVNCVDTDECSIGNPCGNGTCSNVVGGFECACDEGFEPGPMMTCEDINECS
QNPLLCAFRCINTFGGYECTCPAGYVLRDDNRMCRDQDECSDGLDDCESQGMMCKNLIGT
FMCICPPGMQRRPDGEGCMDENECRTKPGICKNGRCINAVGSYRCDCNDGFQPSSTATEC
IDNRQGFCFTEILQVMCQHSSTNRNSVTKSECCCNGGRGWGSHCEICPLPGTTQYKKLCP
LGPGYTTDGRDIDECRVLPNLCKNGQCINTIGSFRCHCNLGYTTDLTSTSCVDLDECAQS
PKPCNFICKNSEGSYQCSCPRGYVMQPDGKTCKDLDECSTKQHNCQFLCVNTIGGFNCKC
PPGFTQHQTACIDNNECNGKSDVCGSRGSCQNSPGSYSCECEKGFSLDGTGHECEDVDEC
GGNHRCQHGCQNMMGGFRCGCPQGYMQHYQWNQCVDENECSNQQSCGSASCYNTLGSYKC
VCPSGFDFDQGMGGCQDVNECSMGSNPCSYGCSNTDGGYLCGCPGGFFRAGQGHCITGFG
FGQGQGQGQGQGQGQYLSPQPEEDDESTLSTEGCYECKINGNYKKKGRQRRSLDNNGIEQ
EPRLSLASVDTESSIPLNLSLAALQNKEPILELLPAIEPLERHVRYVISHGNQDAHFRML
QRRDGKSVLRLGRKTPSPGTYRLEIASVPLYGPRELQELEDEHDADYLLGEIGDALRIKL
HIHLH
NT seq
8658 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgaggtggctcagcaacctgctgctgggatggacggccgtgttttgggccgcc
agcccgtcggcgtacggccaagaccctttccaggccagcaggttctcatcagggccagac
gagagagaaatcgctaacagggtgcgacggaggggacaggaatccctcaggggacccaat
gtgtgcggttcccgtttccactcgtactgctgtcccgggtggaaaacacttcctgcaggg
aaccagtgcatcgtcccgatctgcaggagcacctgtggtgaagggttctgctctcgaccc
aacatgtgcacctgctctaacggccagctgtctccaggctgtggatctcaaggagtgcag
tcctgtaatgtgaggtgtatgaacgggggcagttgcaatgatgattcctgtgtctgtcag
aagggatacagcggcacccactgtggacagccggtctgtgaaaatggctgtcagaacgga
ggccgctgtattggacccaaccgctgtgcctgcgtgtacggcttcaccggcccccagtgc
gagagagattaccggactggcccctgcttcactcaggtcaataaccagatgtgccagggg
cagctgagtggcatcgtgtgcaccaagaccctctgctgtgccaccatcggacgggcgtgg
ggccacccctgtgagatgtgcccggcccagcctcacccctgccgtcgcggtttcatcccc
aacatccgcaccggggcatgccaggatgtggacgagtgccaggccatcccaggactgtgc
cagggagggaactgcatcaacactgtgggctcctacgagtgcaagtgccccgcggggcac
aagcagagtgagactaaccaaaagtgcgaggatatcgatgagtgcagtactatctcagga
gtgtgtgatgggggagagtgcactaacacggctggcagctacgtgtgcacatgtccacga
ggcttcatcaccagctctgatgggacacgctgcatggatcagcgcgtgggagcttgtttc
tcttctctggccaatggccgttgcgcgggggagcagagtggacagtacaccaagatgcaa
tgctgttgtgaaacaggccgctgctgggcagctgtccagatcccggagatgtgtccagtg
agaggctccgatgagtttcaccggttatgtattgccggggttccccatggtggggggagc
aacggggggttcccccaaattcccaacttcaactacaacaacgggccgggcagaggcggg
aacgggggttacatggaccagaggggcaacggcggaaacgggggcaatgcgggtagcagg
ggcaacggtcttcccagctccagcatcggcacagccaccctaaaccagaccattgacatc
tgcaagcacttcactaacctgtgtctgaacggacgttgcattcccaccccctccagctac
cgctgtgagtgcaacatgggcttcagacaggacgtgcgtggagagtgtgtggatgtggac
gagtgcaccagcaacccctgcgtgaacggagactgtgtgaacaaccccgggtcgtatcat
tgcaagtgccacgagggataccagagcacccccaccaagcaggcctgcgttgatatcgac
gagtgcatcatgaacggagtgatgtgcaggaacggccgctgtgtcaataccgacggcagc
ttccagtgcatctgcaacgctggcttcgagctcacacccgacgacaagaactgcgtggat
catgacgagtgcgccaccaccaacatgtgtctcaacgggatgtgcatcaacgaggatggc
agcttcaagtgcatctgcaaacccggcttcgtccttgctcccaatggccgctactgcacc
gatatcgacgagtgccagaccccggggatctgcatgaacggccgctgcatcaactcggag
ggctcgttccgctgtgagtgcctgcccgggctggccatcgacgtggacggccgtgtctgc
gtggacacccacatgcgcagcacctgctacgggggcatcaagaagggcacctgcaaccgg
cccttccccggcgccgtcaccaagtccgagtgctgctgcgccagccaagagcacggcttc
ggggagccctgccaaccctgccctgccaggaactccgccgaattccaggcactctgcagc
agtggcattggaatcacagctgacgggagagatattaacgagtgcgcactggacccggat
atctgtcagaacgggatgtgtgagaatctgagaggaagttaccgctgtatctgcaacacg
ggctacgagtcagaccccagcggcaagaactgcatcgacatcgacgagtgtgctgtgaac
aggctgctgtgtgataacggcctgtgccgtaacacccctggcagctacacctgtacctgc
cccaagggatacgtgttcagaccggactctgagacctgcgaggacgtcaacgagtgtgag
tcgagcccttgtgtgaacggggtgtgccgcaacacagccgggtccttcaactgcgagtgc
tcgcacggcagcaagctggactcgaccaacaccatctgcgtggacagcatgaagggtacc
tgttggctgaacatcaacgatggccgctgtgaggtgaacatcaatggagccacgttgaag
tcggagtgctgctccactctgggggcggcctgggggagcccctgtgaccgctgtgagatt
gacacagcctgcccaagaggctatgccagaatgaagggcgttgtgtgtgaagatgtgaac
gagtgtgaggtgttcccaggagtgtgcactaacgggcgctgcgtgaacaacccggggtcc
ttcacttgcgtctgccctgagggactcaccctggacgggacgggccgcacctgtgtcgac
gtgcgggtggagcagtgctatatgaagtgggaggaggatgaatgtgtggagcccctgcct
gggaagtaccgggtggacatgtgctgctgctctgtgggggctgcctggggtatcgactgc
gaggcgtgccccagtcccgggacccaggaatacgagaccatctgcccacgaggaccgggc
ttcgccaaccgcggggatgtgctctcgggacgagccttctataaagatgtgaacgagtgt
aaggtgttctccgggctgtgctctcacggaacgtgccggaacaccatcggaagcttccgg
tgccgttgcagcagcggcttcgcgctcaacatggaggagaggaactgcacagatatcgat
gagtgccgtatctccccggacctgtgtggacacggcgcctgtgtgaacacgcccggcagc
ttcgagtgcgagtgctttgagggctacgagagcggcttcatgatgatgaaaaactgcatg
gacatcgacgagtgtgagagggaccccctgctgtgccgtggcgggacgtgcatcaacact
gacggcagctacgagtgcacctgccccctcggccacgagctcaccccagacgggacgtcc
tgtgtggatgtgaacgagtgtgagctgagtgacaacctgtgcagaaatggccgctgtgtc
aacatgattggcacctaccagtgctcctgtgaccccgggtaccaggccaccccagacagg
cagggctgcgtggatatcgacgagtgtaccatcatgaacggaggctgtgacacccactgc
accaactcggagggcagctatgagtgcagctgtgcggggggctacgcgctgatgcctgat
aagaggacgtgtgcagacatcgacgagtgtgaggataaccctgacatctgtgatgggggc
cagtgcaccaacatccccggggagtaccgctgcctctgcttcgatgggttcatgtcgtcc
atggacatgcggacctgtatcgatgtgaacgagtgcgacctgaaccccaacatctgtctc
catggcgactgcgagaacaccaagggctccttcatctgtcactgccagctgggctacttc
gtgaagaagggaacaacggggtgcacagatatcgatgagtgtgagatcggagcacacaat
tgcgacatgcacgccgcgtgtgtgaacgtgccagggagcttcaagtgtcggtgccgcgat
ggctgggtaggggacgggctcaagtgtgtggatgtggacgaatgcgccaccgaagagcac
aactgtaatgccaatgccaactgccacaacacccccggctcctaccgctgtgcctgcaag
gacggcttcagcggagacggcttcttctgctcggacgtggatgagtgtgcggacaatgtg
aacctgtgtgagaacgggcagtgcctgaacgcgcccggggggtaccgctgcgagtgtgag
atgggcttcaccccgaccgaggacagcaaggcctgccaggacatcgacgagtgcaccttc
cagaacatctgcgtgttcggcacctgtcagaacctgccggccatgttcaggtgtatctgt
gacgacgggtacgaactggaccgcagcggaggaaactgcacagatgtcaatgaatgtgcc
gaccctgtgaactgcatcaacggtctgtgtgtgaacaccccgggcagctacctgtgcaac
tgccccccagacttcgagctgaaccccaccggggtgggctgtgttgacacgcgtgttggg
aactgcttcctggacacactgacgcgaggtgacggcggactttcctgcagcgcggagatc
ggtgtcggggtcacccgggcatcctgttgctgctccctcgggggcgcctggggaaacccc
tgtgaactgtgccctctcgtcaactccacggagtacaagacgctgtgccccggaggcgag
ggattccgccccaaccccatcactgtcatcttggaggatatcgacgagtgccaggagctg
ccaggcctgtgccagggagggaactgcgtcaacaccttcggcagcttccagtgcgagtgc
ccggccggctaccacctcaacgaggaaacccggatctgcgaggatattgacgagtgtaca
gtccacattgggatctgtggccctggcacctgttacaacacgctgggcaactacacctgc
gtctgccctccggaatacatgcaggtcaacgggggcaacaactgcatggacatgaggaag
agcgtgtgctaccgtaacttcaacgacacgtgtgagaacgagctctccttcaacatgacc
aagaagatgtgctgctgctcctacaacgtgggcaaagcgtggaacaagccctgcgagtcc
tgccccacccccgccacctccgagtaccagctcctgtgtgggaaccaggctccaggcttt
atcattgacatccacactggaaaaccaattgatatcgacgagtgccgtgagatccctgga
atctgtgccaacggcgtgtgcatcaatcagatcggcagcttccgctgcgagtgtcccatg
ggcttcagctacaacaacatcctgctcgtctgcgaagatattgacgagtgcaacaacggg
gacaacttgtgccagcgaaatgccaactgcatcaacatccctgggagctaccgctgcgag
tgctctcctggtttcaaactgtcccccagcggtgcctgtgtggatcgcaacgaatgtcag
gagatccccaatgcgtgcagccacggcgagtgcatcgacacgcagggcagttacaggtgt
ctctgtcacaacggcttcaaggccactgcggaccagaccatgtgcatggatattgacgag
tgtgaccggcagcactgtggaaacggtacctgtaagaacactgtgggctcctacaactgc
ctctgcttccctggctttgagctgactcacaacaacgactgcatggatgtggacgagtgc
accgctctccttgggcaggtgtgtcggaacgggcagtgcatcaacaacctgggctccttc
cagtgcctgtgccaagagggctacgagctgaccgcggacggcaagaactgtgtcgatatc
aacgagtgcgtcagcttccccgggacctgctcccctgggacctgtcagaacctggacggc
tcattccgctgcatctgcccccctgggtacgaggtgcagaacgacaactgcaacgatatc
aacgagtgtgaggaagagcccaatatttgcctgttcgggtcctgcaccaacacccccggc
agcttccagtgcatctgtcagcccggcttcgtgttgtccgacaacgggcgccgctgcttc
gacacccggcagagcttctgcttcactcgatttgacgctggcaagtgctcggtgcccaaa
gctttcaacaccaccaaggacaagtgctgctgcagcacgatgccgggcgagggctgggga
gacccctgcgacctttgcccacaggaaggagatgcgttccatgccctttgcccatacggt
cacggaacaatcattggcaaaggaaacacgcgtgaagacgtgaacgagtgcctggataac
cccgggatctgtgtgaacgggatctgcatcaacacggatggatccttccgctgcgagtgt
cccttcggatacagcctggactacactggggtcaactgcgtcgacacagacgagtgctct
atcggtaacccgtgtggaaacgggacctgcagcaacgtggtgggcggcttcgagtgtgcc
tgcgacgagggcttcgaacccgggcccatgatgacctgcgaggacatcaacgagtgctcc
cagaaccctctgctgtgcgcgttccgctgcatcaacaccttcggaggttacgagtgcacc
tgcccggccgggtacgttctgcgtgacgacaaccggatgtgccgagaccaggacgagtgc
tccgatggactcgatgactgcgagtctcagggcatgatgtgcaagaacctcatcggcacc
ttcatgtgcatctgccccccaggcatgcagcgccgaccggacggagagggctgtatggat
gagaacgagtgccgcacaaaaccgggcatctgtaagaacgggcgctgcatcaacgcggtc
ggcagctatcggtgcgactgcaacgacggcttccagcccagctccacggccaccgagtgc
atcgataaccgccagggtttctgcttcaccgagattctccaggtcatgtgccagcactcc
tccaccaaccgcaactctgtcaccaagtccgagtgctgctgcaacgggggccgcggctgg
gggtcgcactgcgagatctgccctctgcctggcactacccagtacaagaagctgtgccct
ctggggccgggctacaccaccgacggcagagatatcgacgagtgccgagtgcttcccaac
ctctgcaagaacggccagtgcatcaacaccattggttccttccgctgccactgcaacctg
ggctacactaccgacctcaccagcacctcctgtgtggacttggacgagtgtgcccagtct
ccgaagccttgcaatttcatctgtaagaatagcgagggcagctaccagtgctcctgccca
cgagggtacgtcatgcagcccgacggcaagacctgcaaagatctggacgagtgctccacc
aaacagcacaactgccagttcctctgcgtgaacaccattgggggcttcaactgtaaatgc
cctcctggcttcacccagcaccagaccgcctgcatcgataacaatgagtgcaatggcaag
tccgacgtgtgtggctccaggggcagctgccagaactcaccaggcagctacagctgtgag
tgtgagaagggcttctcactggacgggactggacatgaatgtgaagatgtggatgagtgt
ggtggcaatcaccgctgccagcacggctgccagaacatgatggggggcttccgctgcggc
tgcccccagggctacatgcagcactaccagtggaaccagtgcgtggatgagaacgagtgc
tcaaaccagcagtcctgtggctctgcctcctgctacaacacgctgggcagctataagtgt
gtgtgcccatctggcttcgacttcgaccagggcatggggggctgccaggacgtgaacgag
tgctcgatggggagcaacccctgcagctacggttgctccaacaccgacgggggctacctg
tgtggctgccctggcggattcttcagagcagggcagggacactgcatcaccggcttcggg
ttcggccagggtcagggccagggccagggccagggccagggccagtacctctccccccag
cctgaggaggatgacgagagcaccctgtccaccgagggctgctacgagtgtaagatcaac
ggcaactacaagaagaagggccggcagagacgcagcctggacaacaacggcatcgagcag
gagccccggctgagcctggccagcgtggacacggagtcttctatcccgttgaacctgagc
ctggccgcgctgcagaacaaggagcccatcctggagctgctgcccgccatcgagcccctg
gagcgccacgtgcgctacgtcatctcccacggcaaccaggacgcccacttccgcatgctg
cagcggcgcgacggcaagagcgtgctgcgactgggacgcaagacccccagccccgggacg
taccgcctggagatcgccagcgtacccctgtacggacctcgggagctgcaagagctggag
gacgagcacgatgcagattacctgctgggagagattggggacgcgctccgaatcaaactg
cacatccacctgcattag
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integrated database retrieval system
