Polyodon spathula (Mississippi paddlefish): 121301768
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Entry
121301768 CDS
T07273
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121301768 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121301768 (ddx42)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121301768 (ddx42)
Spliceosome [BR:
pspa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121301768 (ddx42)
Complex B
121301768 (ddx42)
Complex C
U2 SnRNP specific factors
121301768 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121301768
NCBI-ProteinID:
XP_041087300
LinkDB
All DBs
Position
28:8200535..8226515
Genome browser
AA seq
1029 aa
AA seq
DB search
MASRNCTGTMNWNKGGTGGKRGFGFGGFALASGKKEEPKAQKGSHSAFPPPATGVYGKGQ
QLPAFYKIGSKRANLDEENAYFEDDEEDSSSMDLPYIPAENSPTRQQFQNRTGGSDSEED
PLDAFMAEVEDQAAKDMRRLEEKDKEKKNTKGIRDDIEEEDDHEAYFRYMSENPMAGAIA
DEEEDSIEYDSDGNPIAPAKRIICPLPPIDHSEIDYPPFEKNFFEEHEELASLAPDQVAE
LRNKLNLRVSGAAPPKPCTSFAHFGFDEQLMHQIRKSEYTKPTPIQCQGVPIALNGRDMI
GIAKTGSGKTAAFIWPMLVHIMDQKELQPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN
LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFD
MGFEYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPVRVVQGDIGEANEDVTQL
VEVMPSGLEKWGWLTRRLVEFTSAGSVLIFVTKKANCEELATNLNQEGWTIGMLHGDLDQ
SERNRVISDFKNKSLPVLVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGV
KGVAHTLLTHKDTTFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIG
GGGLGYRERPGLGADTSECSGSAVMSNYEAYRPASGAMGDRMSAMKAAFQSQFKNQFVAA
SGFPPKLTPANSSSEGWTSAGSLSSVPTGAPQGGPSQERLQATPSGVAPGSLALGDRMAG
FSSGGTLRSLRDSYSTPEPPPPAPREAIKERHGDSRGRHGDRDRHTDRDRHGDRERYADS
SRQGAGYGSSSRHGESRNGESSRRDREGRGERGSSNRGGERGGERASVSLLSPEDRGGER
GGERGNERGSERGGERWCDRENENERGDTGREDSFAIPDAPKRKKSSPLLPPFLSALLTV
PDWLLALRAGNSTEMQSPTQLLQLELKVCSPPPVPKPVTSFTSKELRGLCELPPPGCSEP
PVQENQQAL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacgcaactgcacaggcactatgaactggaataaaggcgggacgggtggcaag
cgtgggtttggttttggggggtttgccctggcctcggggaagaaggaggagcccaaagca
cagaaggggtcccactctgctttcccacccccggcgacaggggtctatgggaaggggcag
cagctcccagcgttctataagattgggtcgaagagagccaacctggacgaggagaatgcc
tactttgaggatgatgaggaggactccagcagtatggacctgccctacatccctgctgag
aactccccgactcggcagcagttccagaacagaaccgggggctcggatagtgaggaagac
ccccttgatgccttcatggctgaagtggaggaccaggctgccaaagatatgagaagactt
gaagaaaaagacaaagaaaagaaaaatacaaagggtattcgtgatgacattgaggaggaa
gatgaccatgaggcctatttccgctacatgtctgagaacccaatggcgggggcgattgcg
gacgaggaggaggattccatcgagtacgacagcgacgggaaccccatcgcccccgccaag
aggatcatctgcccgctgccccctatcgaccactccgagatcgattacccccccttcgag
aagaacttcttcgaggagcacgaggagctggccagcctcgcccccgaccaggtggcggag
ctgaggaataagctgaacctgcgggtctccggtgcagcccctcctaagccctgcaccagc
tttgcacacttcggcttcgacgagcagctcatgcaccagatccgcaagtcggagtacacc
aagcccacccccatccagtgccagggcgttcccatcgcgctgaatggcagggacatgatc
ggcatcgccaaaactggcagcgggaagactgctgccttcatctggcccatgctggtgcac
atcatggaccagaaggagctgcagccaggagatgggcccatcgccgtcattgtgtgcccc
accagagagctatgccagcagatccacgcagagtgcaagcgcttcgggaaggcctataac
ctgcgctctgtggccgtgtacggaggcggcagcatgtgggagcaggccaaggctctccag
gagggggccgagatcgtggtctgcaccccggggcgcctcattgaccacgtgaagaagaag
gccacgtctctgcagagggtcacctacctggtgtttgacgaggctgaccgcatgtttgat
atgggctttgaataccaggtcagatcgattgccagtcacgttcgaccggacagacagacc
cttctgttcagcgccaccttccgcaagaagattgagaggctggcccgagacatcctggtg
gaccccgtccgcgtggtgcagggagacatcggggaggccaacgaggacgtgacccagctg
gtggaggtcatgcccagcgggctggagaagtggggctggctgacccggcgcttggtggag
ttcacctccgccggctcggtgctcatcttcgtcaccaagaaggcgaactgtgaagagctg
gccaccaacctgaaccaggagggctggaccatcgggatgctgcacggggacttggaccag
agcgagaggaacagggtcatctcagacttcaagaacaagagcctgcctgtgctggtagcc
accgacgtggcggcccgtggtctggacatcccctccatcaagaccgtggtgaattacgac
gtggcccgggacatcgacactcacacccaccgaatcgggcgtacggggcgagcaggggtg
aagggcgtggcgcataccctgcttacacacaaggacaccaccttcgcaggagacctggtc
cgcaacctggagggagccaatcagagcgtgagcaaggagctgatggacctggccatgcag
aacccctggttccggaagtctcgattcaaaggagggaaagggaagaagctgaacatcggc
ggcggggggctggggtacagggagagacctggcctgggagcagacacctcggagtgcagc
ggcagtgctgtgatgagcaactatgaagcgtacaggcctgcttccggagccatgggggac
cgcatgtctgcaatgaaggctgctttccagtctcagttcaagaaccagtttgtggcggcc
tcgggtttccctccaaagctgactcctgctaacagcagctccgagggctggaccagcgcg
ggcagcctgagctccgtgcccacgggggcgccccagggggggcccagccaggagaggctg
caggccacgccctctggggttgctccaggctccttggcactgggggacaggatggcaggc
ttctccagcggcgggactctccgctccctccgcgacagctactccacaccagaaccccct
ccccctgccccgcgagaggccatcaaggagcgccacggagacagcagggggcgacacgga
gacagggaccgccacacagacagggatcgccatggagacagggagcggtacgcagactcc
agccgacagggagcgggatacggcagcagcagccgccacggagaaagtcgcaacggggag
agcagccggagagacagggagggccggggggagagagggagcagcaacaggggaggagag
agggggggagaaagggcctcagtgtccctcctctctcccgaggacaggggaggggagagg
gggggagagaggggaaacgaaaggggtagtgagaggggaggggagaggtggtgtgacagg
gagaacgagaacgagaggggtgacaccggcagggaagatagtttcgccatcccagatgcc
ccgaagcgcaagaagagcagccccctgctccctcccttcctgtctgccctgctgactgtc
ccagactggctgcttgctttgcgagcaggaaattccacggagatgcaatcccccacacag
ctccttcagctggaactgaaggtctgcagccctcctcctgtccccaagccagtcacatcc
tttacatcaaaggaactccgtggcttgtgtgagctaccaccccccggctgcagtgaaccc
ccagtgcaagagaatcaacaggcattgtag
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integrated database retrieval system
