Polyodon spathula (Mississippi paddlefish): 121301840
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Entry
121301840 CDS
T07273
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121301840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121301840
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121301840
Spliceosome [BR:
pspa03041
]
Complex C
Other components
Step II factors
121301840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
PRP38_assoc
nSTAND3
AAA_16
T2SSE
PhoH
Sigma54_activ_2
TsaE
Flavi_DEAD
Cas3-like_C_2
nSTAND_NTPase5
ABC_tran
Motif
Other DBs
NCBI-GeneID:
121301840
NCBI-ProteinID:
XP_041087408
LinkDB
All DBs
Position
28:complement(4798570..4819936)
Genome browser
AA seq
1199 aa
AA seq
DB search
MAEGGADELQKLEYLSLVSKVCTELDNHLGISDKDLAEFVINLAEKNPTFDSFKGVLIKN
GAEFTDSLISNLLRLIQTMRPPAKPSASQGKEPVLKSKSEKEKLKELFPALCRPDNPHTR
ITLDDDVKVAADAMKELEAFMPSISEEKPRSSRHRSSDGGKRKKRSRSRDRDRDRDRERD
KHRDRKILHRSRSRSRDRGKGKSRWRSRSRSLSPSRERWDKDKGADRWKDKHVDRPPPEE
PTVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKV
KVLSFTGSKTSLSMKDVDQDTGEDLNPNRRRNMGGEGSEETTMRNPDRPSHMSLVSMPEV
EDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIEL
VEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQREAEMDSI
PMGLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSILEQ
RESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRV
AAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLGQYAI
IMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRT
YPVEILYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLG
PDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVK
QKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQ
RTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMA
EFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEGD
HLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATV
RVQKAICSGFFRNAAKKDPQEGYRTLIDSQVVYIHPSSALFNRQPEWVVYHELVLTTKEY
MREVTTIDPRWLVEFSPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaggtggagctgacgagctgcagaagctcgaatatctttccttggtttccaag
gtttgtactgaattggataaccatctcgggatcagcgacaaagatttggctgaatttgtg
ataaacctggctgaaaagaaccccacatttgattccttcaaaggagtactgattaaaaat
ggagcagaattcacagattctcttattagcaatttgttgcgtctcatacaaacaatgcga
cctccagcaaagccgtctgcaagtcaagggaaggaaccagtgcttaaatcaaagtctgaa
aaggagaagctgaaagagctcttccctgccctgtgccggccagataatccacatacgaga
attacacttgatgatgatgtgaaagtagcagccgatgccatgaaagaacttgaagcgttc
atgcccagcatcagtgaagaaaaaccaaggagcagtagacatcgttcttctgatggtgga
aagagaaagaagcggagcagaagcagagacagagacagagatagagatagagagagggac
aagcaccgtgacaggaagattcttcaccgctcccgctcccgctcccgggacagagggaag
gggaaatcccgctggcgatcccggagcaggagcctcagccccagcagagaacgctgggac
aaagacaagggagccgaccgttggaaagacaagcatgtggaccggccgcctcccgaggaa
cccacagtgggagacatctacaatggcaaagtcactagtatcatgcaatttggctgcttc
gtgcagctggagggactgaggaaacgatgggaaggattggttcacatctcagaactcaga
agagaggggagagtcgccaatgttgcagatgtggttagcaaaggtcaaagggtaaaggtc
aaggtgctgtcttttaccggatctaaaaccagcttaagtatgaaggatgtggaccaggac
actggtgaggacctgaaccccaacaggcgtcggaacatgggtggagaaggcagcgaggag
acgaccatgcggaacccagacagacccagtcacatgtccctggttagcatgcctgaggtg
gaggacgacactctggagcgcaaacggctcaccaagatctcggacccagagaaatgggag
atcaaacagatgattgcagccaacgttctctctaaggaagagtttccagactttgatgaa
gagactggtattctccctaaagtcgacgatgaagaagatgaggacctggagattgagctt
gtggaggaagagccaccattcctgaggggacacaccaagcagagcatggatatgagtcct
gtgaaaattgtgaagaatcccgatggctccctgtcccaggctgctatgatgcagagtgcg
ttggcaaaagagagaagggaggtgaaacaggcccagcgtgaggcggagatggactccatt
ccaatggggctcaataagcactgggtagatcccttacctgatgccgatggcaggcagatt
gcagccaacatgcgaggtattgggatgatgcccaacgatatcccagagtggaagaaacat
gcgttcggaggcaacaaagcatcttatggcaaaaagacgcagctgtcaatcctggagcag
agagagagcctgccaatctacaagctgaaagagcagctcattcaggcagtccacgataac
cagattctgattgtaattggagagactgggtcaggtaagaccacccagatcacacagtac
ctggcggaggcaggctacaccaccaggggaaagatcggctgtacccagcctcgacgtgtg
gctgccatgtctgtcgccaagcgagtgtccgaggagtacggttgctgtttgggccaggag
gtgggttacactattcgatttgaagactgtacgagtcccgagactgtcattaagtacatg
acagacggtatgttgctcagagagtgcctgattgaccccgaccttggccagtatgccatc
atcatgttggacgaggcccacgagaggaccatccacactgatgtgctctttgggctgctt
aaaaagactgtgcagaagcgcactgacatgaaactaattgtgacgtcggccacgctggat
gctgtgaagttctcgcagtatttctatgaagctcccattttcacgatccctggaagaaca
taccctgtggagattctgtacaccaaggagccagagacagactatctggatgccagcctc
atcactgtgatgcagattcatctgactgagcctccaggtgatgttttggttttcctgact
ggtcaggaggagattgacactgcctgcgagatcctgtatgagagaatgaagtccctggga
ccggatgtcccagagttgatcatcctccctgtctactctgctctgcccagtgagatgcaa
actaggatattcgatccagctccgcctggcagcagaaaagtagttattgctacaaacatt
gcagagacatcattaacaattgatgggatttactatgtggtggatccgggatttgtaaaa
caaaaagtgtacaattcaaagactggaatcgatcagctggtggtgactccaatttcacag
gcccaggctaagcagagagctggcagagctggcagaacaggccctgggaagtgttacagg
ctatacacagaacgtgcctacagagatgaaatgctgactacgaacgtgccagaaatccag
agaactaacctggccagcactgtgctgtcactgaaggctatggggatcaatgacctgctg
tccttcgatttcatggatgcccccccaatggagactctgatcacagcgatggagcagctg
tacaccctcggcgctctggatgatgaggggctgctcacacgcctggggcgcaggatggct
gaatttcctctggagcccatgctgtgtaaaatgctaatcatgtccgtccatctgggctgc
agtgaggaaatgctgaccatcgtctccatgctttcagtgcagaacgtcttctatagacca
aaggacaagcaagcccttgctgaccagaaaaaggccaagttccaccagcctgagggagac
cacctcaccctgctggctgtctacaactcctggaagaacaacaagttctccaacccctgg
tgttacgagaacttcatccaggctcgctccctgcgccgggcacaggacatccgtaagcag
atgttaggcatcatggacaggcataaactggacgtggtatcttgtggcaaagctacagtc
agagtgcagaaagcaatctgcagcggtttcttcagaaatgcagctaaaaaggaccctcaa
gaaggctaccggacccttattgattcacaagtagtctatattcacccatctagtgcactt
tttaatagacaaccagagtgggtggtataccatgagctggtactgacaacaaaggaatac
atgcgagaggtgaccaccatagaccctcgctggctggtggagttttctccagccttcttc
aaagtgtctgatccaaccaaactcagcaagcagaagaaacagcagagactggagcctctg
tacaaccgctacgaggagcccaatgcctggagaatctctagggccttcagacgccgctag
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