Polyodon spathula (Mississippi paddlefish): 121301874
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Entry
121301874 CDS
T07273
Name
(RefSeq) WD repeat-containing protein 36-like
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121301874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121301874
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121301874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Utp21
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_EML
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SCAP
NBCH_WD40
Beta-prop_LRRK2
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_EIPR1
Tricorn_2nd
Sterile
Cytochrom_D1
ChuX_HutX
Motif
Other DBs
NCBI-GeneID:
121301874
NCBI-ProteinID:
XP_041087490
LinkDB
All DBs
Position
2:80493357..80553983
Genome browser
AA seq
895 aa
AA seq
DB search
MSVGHRKGSAIFSGFRALGLYSNHLPHVVRYHKRHREFYVVTAVGKCFHTYNVKKLGIVA
VSNALSGDITCLTADRMLVFVAHGTIVMAFARSKEVVHIYKGHNAEVHLLQPFGDHVISV
DRDNVVVIWDVQSEEEYLQLNFDKMVFAVSAIMHPSTYLNKILLGSEQGGLQLWNVKSNK
LLYTFSGWGSGVTVLQQAPAVDVVAVGLASGQIVIHNIKCDESLMKFQQDWGPITAISFR
TDGHPVMAAGSPVGHIGLWDLDDKKLISQMRNAHATAIAGMTFVHGEPLLITNGADNAIR
VWVFDAPGGGGRLLRSRMGHSAPPTKIQHHGQNGQNVLSAGQDGTLQSFSTVHERFNKSL
GRGSINKKKSKKKGLQYDTMKLPPITAFASETARQSDWDGIVACHRGYLIATTWNYQKTS
MGAYKLEPERFHKDRGLNVHATAVAITSCGNFGVVALSTGHIDVYNMQSGMHRGQYGKEK
AHEGPVRGVAVDGLNQLTISAGADRLIKFWKFKSKELVHTATLSSSPASILLHRDSGMLA
ISLDDFSINIMDIETRKIVRKFSGHRGQINDMAFSPDSRWLVTASMDCAIRTWDLPSGCL
VDCFLLDSAAVSITMSPTGDFLVSSHVDDLGIYLWSNNTLFNLVSLRPLPSDYEPPVVTL
PGTCPAEDLDSPEDDEEPSDEMIEYESPEQLGEQLVTLSLLPDSRWKNLLNLDVIKKRNK
PKEPPKVPKSAPFFIPTLPGLVPRFAVSEGQNAEEQSKIVNLGILAQKSDFYMQLEDALV
SNNYSSTVRLLKEMGPSRIETELRSLAPEGGGSLDVMQSFLRMIGYILDSKRDFDLAQAY
LALFLKLHLKLISQESTLMDEASKVLGPLEETWTHMQMLFSQSLCLLGYMKSALL
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcggacacaggaaaggaagcgctatattctctggctttagagctttggggctc
tactccaaccacctgcctcatgtggttcgctatcacaagaggcaccgtgaattctatgtg
gtcactgctgtcggaaaatgcttccatacttacaacgtaaagaagcttgggattgttgca
gtcagcaatgcactttctggggacatcacttgcctgacagctgataggatgctggtcttc
gttgctcatggaacaattgtgatggcatttgccagaagcaaagaggtggtacacatttac
aaaggccacaatgcagaagttcatctattgcagccatttggggaccatgtgatttcagtg
gacagagataatgttgtcgttatctgggatgtacagtctgaagaggagtacctgcagtta
aactttgataagatggtgtttgcagtctctgccataatgcatccaagcacgtatctcaat
aaaattctgttaggaagcgagcaggggggtcttcagctgtggaatgtcaaatcaaacaaa
cttttatacacattctcaggctggggttcaggagtgacagtacttcaacaggctccagca
gtggatgtagtcgcagtaggacttgcatcggggcagattgtcattcacaacataaagtgt
gacgagtcgttaatgaagtttcagcaagactggggcccaattacagcaatatccttccgc
acagatggtcatccagtaatggctgctgggagccctgttggacacattggactgtgggac
ttggatgataagaaactaatcagccagatgagaaatgctcatgcaacagccatcgcaggg
atgacgtttgtccatggggagccacttctgattacaaatggtgctgataatgccatacgg
gtgtgggtatttgatgccccgggaggtggtggccgcttgttgagaagccgcatgggacac
agtgctcctcctaccaaaatacagcaccatgggcaaaacgggcaaaacgttctcagtgct
ggtcaagatggaacgttacagtcgttttctactgttcatgaacggttcaataagagcttg
gggcgtggttccattaacaaaaagaaatcgaagaagaaaggacttcagtatgataccatg
aaactccctcccattactgcgtttgcttcagaaacggcacgccagagtgattgggatggt
atcgttgcctgccaccgaggctatcttattgcaacaacgtggaattaccagaagacatcc
atgggggcatacaaactggagccagaacgattccacaaagatcggggattgaatgtgcac
gccacggctgtggctataacatcttgtggcaactttggtgtggtagcactttcaacagga
cacatcgatgtctataacatgcagtcaggcatgcatagaggtcaatatggcaaagagaaa
gcccatgaaggtcctgttcgaggggttgctgtagatgggctaaaccagctgactatcagt
gctggtgcagacagactcatcaagttttggaagttcaagtctaaggaattggttcacact
gctacactgagttcctctccagcctccatacttttacatcgagacagtggaatgttggcc
atttctctggatgacttcagtattaatattatggacattgaaacaagaaagatagttaga
aagttttcaggacatcgcggacaaatcaatgatatggcctttagtccggacagtcgatgg
ttagtaactgcctcaatggactgcgctattaggacatgggatcttccatctggctgcctt
gtagactgctttttgttagattcagcagcagtgagcatcacaatgtcacctactggagat
ttcctggtctcatcgcacgtggacgatctgggaatttatctctggtccaacaacacgctg
tttaatctggtttccctgcgccccttgccttctgattatgagcccccagtggtgacgctt
cctggaacttgtcctgcagaagatttggacagccccgaagatgacgaggagcccagtgat
gagatgatcgaatatgaatccccagagcagctgggagagcagttggtgacactgtcttta
ctgccagactcaagatggaaaaacctcctcaatttggatgtcatcaagaaaagaaacaag
cccaaggagcccccaaaggtgcctaaatctgccccgttcttcattcctaccctgcctggt
ctcgttccccgctttgctgtgtccgagggtcagaatgctgaagagcagtcaaaaattgta
aatcttggaatactggcacagaaatctgatttctacatgcaactcgaggatgccttagtc
agcaacaactattcctctacagtgaggctcttaaaggagatgggaccctcccgcattgaa
acggagttgcgaagtctagcccctgaaggtggtggctccctggatgtgatgcagagcttc
ctcagaatgattggctacattctggactccaaacgtgattttgacctggcccaagcctac
cttgctttgtttctaaagctgcaccttaaattgatttcccaagaatcaacactgatggac
gaagcatccaaagtgttggggccactggaagaaacctggacgcacatgcagatgcttttc
agccagagcctgtgtctgttgggatacatgaaaagtgctttgctgtga
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