Polyodon spathula (Mississippi paddlefish): 121301904
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Entry
121301904 CDS
T07273
Name
(RefSeq) thyroid hormone receptor alpha-like isoform X1
KO
K05547
thyroid hormone receptor alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04080
Neuroactive ligand-receptor interaction
pspa04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121301904
04081 Hormone signaling
121301904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121301904
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pspa03310
]
121301904
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121301904
Nuclear receptors [BR:
pspa03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
121301904
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
121301904
NCBI-ProteinID:
XP_041087551
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Position
28:820488..831350
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AA seq
427 aa
AA seq
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MEHMPKEPNPNQSEGEEKRCLNAPNRRRRISQCPMSALNLSVSGYTPSYLEKDEPCVVCR
DKATGYHYRCITCEGCKGFFRRTIQKNLHPTFSCKYDGSCIIDKITRNQCQLCRFNKCIA
VGMAVDLVLDDSKRVAKRHLIEENRERRRKKETLQTLQDRPQPTAQEWELIAMVTEAHQH
TNAQGSHWKQKRKFLPEDIGQSPVTAASDGDKVDLEAFSEFTKIITPAITRVVDFAKKLP
MFSEVRGSGFGVWGSVSLLPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVK
REQLKNGGLGVVSDAIFDLGKSLAQFSLDDAEVALLQAVLLMSSDRSGLLCVDKIEKCQE
RYLLAFEHYINYRKHSLPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEMFPPLFLE
VFEDQDA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggaacacatgcccaaagagccaaatcctaaccaatcagagggagaagagaaaaggtgt
ctcaatgctccgaacaggagaaggcggatcagtcagtgccctatgagtgcgctgaacctc
tctgtttcagggtacacccccagctacctggagaaggacgaaccatgcgtggtgtgcaga
gacaaggccactggataccactaccgctgcatcacctgcgagggctgcaagggttttttt
cggcgcacgatccagaagaacctgcaccccaccttctcgtgcaagtacgatggcagctgc
atcatcgacaagatcacgcgcaaccagtgccagctgtgccgctttaacaagtgtatcgct
gtgggcatggccgtggacttggtgctggacgactcgaagcgcgtggcgaagcggcatctc
atcgaggagaatcgcgagcgccggaggaagaaggagacgctgcagaccctgcaggaccgg
ccccagcccacggcccaggagtgggagctaatcgccatggtgaccgaggctcaccagcac
accaacgcacagggatcccactggaaacagaagcgcaagttcctgcccgaggacatcggt
cagtccccggtcactgctgcatcggacggagacaaggttgacctggaggccttcagcgag
ttcaccaagataatcaccccagccatcacacgcgtcgtcgacttcgccaaaaaactgccc
atgttctccgaggttcgaggttcggggttcggggtttggggttcagtgtccctgctgcct
tgtgaagaccagatcatcctgctgaagggctgctgcatggagatcatgtcgctgcgggcg
gccgtgcgctacgaccctgacagcgagaccctcacactcagcggggagatggccgtgaag
cgcgagcagctgaagaacggggggctgggggtcgtctcagacgccatcttcgacctgggc
aagagcctggcgcagttcagcctggacgacgcggaggtggcactgctgcaggccgtcctg
ctcatgagctcagaccggtcggggctgctctgcgtggataagatagagaagtgccaggag
aggtacctgctggcgttcgaacactacatcaactaccgcaagcacagcctccctcacttc
tggcccaagctgctgatgaaggtgacggacctgcgcatgatcggggcgtgtcatgccagc
cgcttcctgcacatgaaggtggagtgtcccacggaaatgttccccccactcttcctggag
gtgtttgaggaccaggacgcctag
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