Polyodon spathula (Mississippi paddlefish): 121301945
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Entry
121301945 CDS
T07273
Name
(RefSeq) integrin beta-3-like
KO
K06493
integrin beta 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03266
Virion - Herpesvirus
pspa04081
Hormone signaling
pspa04145
Phagosome
pspa04148
Efferocytosis
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04810
Regulation of actin cytoskeleton
pspa04820
Cytoskeleton in muscle cells
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
121301945
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
121301945
04512 ECM-receptor interaction
121301945
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121301945
04148 Efferocytosis
121301945
09144 Cellular community - eukaryotes
04510 Focal adhesion
121301945
09142 Cell motility
04820 Cytoskeleton in muscle cells
121301945
04810 Regulation of actin cytoskeleton
121301945
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121301945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121301945
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121301945
04515 Cell adhesion molecules [BR:
pspa04515
]
121301945
04090 CD molecules [BR:
pspa04090
]
121301945
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
121301945
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121301945
Cell adhesion molecules [BR:
pspa04515
]
Integrins
Integrin beta subunits
121301945
CD molecules [BR:
pspa04090
]
Proteins
121301945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
I-EGF_1
PSI_integrin
EGF_integrin
EGF_2
Integrin_b_cyt
EGF_Teneurin
vWA_SIBA-E
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
121301945
NCBI-ProteinID:
XP_041087611
LinkDB
All DBs
Position
28:complement(6155527..6200173)
Genome browser
AA seq
796 aa
AA seq
DB search
MFYRTFWVFSVLSFVISEVWSANICTSRGVNTCRECLAVHPSCGWCFQEDFGRGTASSSR
CDLKESLLQKGCSQQFIEYPTSTLSKQQDKPLSGTGSGAGSDATQISPQKLKMNLRPDDS
QKFTVQVRQVEDYPVDLYYLMDLSYSMKDDLQKLRTLGNDLATAMGKLTSNLRMGFGAFV
DKPLSPYMFISPQAAIDNPCIGIQMTCMSQFGYRHVLTLTDQVSRFNEEVKKQDVSRNRD
APEGGFDAIIQAAVCKEKIGWRQGASHLLVFTTDAKTHVALDGRLAGIVQPNDGKCHVGE
DNNYAGSTTLDYPSLALLTEKMSENNINLIFAVTNPVEELYRNYSELIPGTTVGILSHDS
GNVIQLIVDAYAKIRSKVELELLDLPDELSLSFNATCTNGEIIPGQKSCSGLKIGDTVTF
SVEARARGCPKEKNRTFTIKPVGFKDSLQITVNFECDCNCQALAVPASPLCNNGNGTYEC
GICQCLPGRLGPRCECSEGDYNPSQQDKCSPKANSSICSGHGECICGQCVCHNTDFGKYW
GKFCECDDFNCVSYKSKLCSGHGKCSCGDCLCDPDWKGDYCNCSTRTDTCMSSIGLLCSS
RGQCVCGTCECTQPGAYGDTCEKCPTCPDVCTFKKDCVECRNFQRGKLNDDKTCARICRD
EIILVKDLGLHDKNAMNCTYKDEDDCVVRFQYYEDASGTSVLYVVEERECPKGPDILVVL
LSVAGAILLIGLAALLIWKLLITIHDRREFAKFEEERAHAKWDTVRGDKRAAGSRRDKTS
YNSIGRTYKYSWFPFS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgttctataggactttctgggttttttcggtgctctcattcgttatttcggaagtttgg
agtgctaacatttgcacatcccgaggagtgaacacatgcagggaatgcctcgcggtccac
cccagctgtggctggtgctttcaggaggactttggtcgtggaactgcaagctcatctcgc
tgtgacctcaaggagagtttactgcagaagggatgcagtcagcagtttattgaatacccc
accagcaccttgagtaagcagcaggacaagcccctgagtgggacgggatccggagcaggg
tccgatgccacacagatttccccccagaaactgaaaatgaacctgcgacctgatgactct
cagaagttcacggtccaggtgcggcaggtggaggactatcccgtggatctctactacctg
atggatctgtcctactccatgaaggatgacctgcagaaactccgcactctgggcaatgat
ctggccaccgccatgggcaaactcaccagcaacctgcgcatgggctttggggcctttgtg
gacaagccactctccccatacatgttcatttctccccaggctgccatagacaacccctgc
ataggcattcagatgacatgtatgtcccagttcggctacaggcatgttctgactctgacg
gatcaggtgagccggttcaatgaggaggtgaagaagcaggatgtctctcgaaacagagac
gctcctgaggggggatttgacgccatcatccaggctgctgtctgcaaggagaagatcggc
tggcgtcagggtgcttctcatctcttggtgttcaccactgatgccaagacccacgtggct
ctggacggcagactggcaggcatagtgcagcctaacgatgggaagtgccacgtcggggaa
gacaataactatgcagggtccaccactctggattatccatcactggccctgctgacggag
aagatgtctgaaaataacatcaacctaatctttgctgtcacaaaccctgtggaggaactc
taccggaattacagtgagctgatccccggaaccacagtggggatcctatcacatgattca
gggaatgtcatccagctcattgtggatgcctatgctaaaatccgttcgaaggtagagttg
gaactcctggatctccctgatgagctgtccctgtccttcaatgccacctgcacaaacgga
gagatcattcccgggcagaagtcctgctctgggctgaagatcggagacacagtgaccttc
agtgtggaggcccgcgccagaggctgccccaaggaaaaaaacaggaccttcaccatcaaa
ccagtgggcttcaaagactctctgcagatcacagtgaacttcgagtgcgattgcaactgc
caggccctggccgtgcccgctagcccgctctgcaataacggcaatggaacgtatgagtgc
gggatatgccagtgcctgccagggcgcttgggcccacgatgcgagtgctctgagggagac
tacaaccccagccagcaggataagtgcagccccaaggctaacagttccatctgcagcggg
cacggcgagtgtatctgtggccagtgcgtgtgccacaacaccgacttcgggaagtactgg
ggcaagttttgcgagtgtgatgacttcaactgtgtgagctacaagagcaagctctgttca
ggccatgggaagtgcagctgtggagactgcctgtgtgatccagactggaagggggattac
tgtaactgctcaacacgcacagacacctgcatgtccagcattgggctgctgtgcagctcc
aggggacagtgtgtctgtgggacgtgtgagtgcacccagcccggcgcctatggggacacc
tgcgagaaatgccctacctgtcccgatgtctgcaccttcaagaaggattgtgtggaatgc
agaaatttccagaggggcaaactcaatgatgacaagacttgcgcacgaatctgcagagat
gaaatcatactggtgaaagaccttggtttgcatgataagaatgctatgaactgtacctac
aaagacgaagatgactgtgtggtgaggttccagtactatgaggatgccagtggaacatca
gtcctctatgtggtcgaggaacgagaatgcccgaagggtcctgacatcctggtggtcctg
ttatcggtggcgggcgctatcctgctcatcggcctggctgccctgctaatctggaagctg
ctcatcaccattcacgaccgccgcgagtttgccaagtttgaggaggagcgtgcccacgcc
aagtgggacacggtgaggggagataaaagggctgcgggttccaggagggacaaaacaagc
tataattcaataggcaggacatacaaatacagctggtttcctttcagctaa
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