Polyodon spathula (Mississippi paddlefish): 121301955
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Entry
121301955 CDS
T07273
Name
(RefSeq) nucleolar transcription factor 1-like isoform X1
KO
K09273
upstream-binding transcription factor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121301955
03021 Transcription machinery [BR:
pspa03021
]
121301955
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
121301955
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
121301955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
121301955
NCBI-ProteinID:
XP_041087628
LinkDB
All DBs
Position
28:complement(9032718..9046708)
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AA seq
577 aa
AA seq
DB search
MPSPRFVIWDLAKLLTVWIRLVTFCETHYLICRVPAAFIFTISESYVKSDPDYSKTIVFS
RHTAREPPLPGFTLLLIADIVWTSLKPRMNGTMELSEEVIPVQEEASQNWPKEDLLSLLE
SMRINLPQNDLTKFKTAESHLDWNKVAFNQYTGDMCKEKWLEISHEVRKFRTLSEIILDA
QDHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSMKYKE
LPDKKKMKYMQDFQREKEEFERNMARFRDEHPDLMENFKRSDIPEKPKTPQQLWYSHKRK
IYLKTHPDATTKDIKEGLGKQWSQLPDKKRLKWITKSLEQQKQYEEVMRGYIQQHPELNM
SQERITKSTLTKAERQLKDKFDGRPTKPPPNGYSMYCAELMSNMKDVPSTERMVMCSRQW
KLLAQKEKDGFQKRCEQRKKAYEIEMNRFLCSLSEEEQQRVLGEEKMQGFNKKGAGNPPS
KKNSISKGSSDKPKRPISAMFIFSEEKRHKLQEERPELAESEVTRLLARMWNDLSDKKKV
CMAASEIGRGCFSEAARQSRTFWFFSYFEMISLGLVN
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctccccggtttgtcatctgggatctcgctaaactcctcaccgtgtggattcgc
ctcgttacgttctgtgaaacccattatctgatttgccgtgtaccggctgcttttattttt
actatctctgaatcctatgtcaaatctgacccagactattcgaagacgattgtcttcagt
cgccataccgcccgagagccgcctcttcccggattcactctccttcttatcgccgatatt
gtctggacgtctttgaagccgagaatgaacggaactatggagttgtctgaagaagtcatt
cctgtccaggaagaagcttcacaaaactggcccaaagaggacctgctgagcttgctagag
agcatgagaatcaaccttccccagaatgacctgaccaaattcaaaactgcagagtcacat
ctggactggaacaaggtggcattcaaccagtacacaggagacatgtgcaaagagaaatgg
cttgagatttctcatgaggtgcggaagttccgcacgctgtcggaaatcatcttagacgct
caggatcatgtgaagaacccctacaagggcaagaagctcaagaaacatcctgatttccca
aagaaacccctgactccctacttccgcttcttcatggagaaaagagcaaagtatgccaaa
ctgcacccagagatgagcaacctggatctcaccaagatcctgtccatgaagtacaaggaa
ctgccagacaagaagaagatgaaatacatgcaggactttcagagggagaaggaagagttt
gaacgcaatatggcaagatttagggatgagcaccctgacctgatggagaactttaagcgc
tcggacatcccggaaaaacccaaaactccccagcaactctggtatagtcacaagaggaag
atctacttaaaaacacaccctgatgccacgaccaaggatatcaaagaaggcctgggcaag
cagtggtcccagctgcctgacaagaagaggctgaagtggatcacaaagtctctggagcag
cagaagcagtatgaggaggtgatgcgagggtacatccagcagcacccggagctcaacatg
agccaggagcgcatcaccaagtccaccctgaccaaggctgagagacagctgaaggacaag
tttgacggcagacccaccaagccccctccgaacggttactccatgtactgtgccgagctc
atgtccaacatgaaggacgtccccagcaccgagcgcatggtgatgtgcagccggcagtgg
aagctgctggcccagaaagagaaggacggctttcagaagcgctgcgagcagagaaaaaag
gcgtatgaaattgagatgaaccggttcttatgtagtctctcagaggaggagcagcagcgt
gtgttgggagaggagaagatgcagggcttcaacaagaaaggtgctggcaaccctccctcc
aagaagaactccatctccaaggggagctcggacaaacccaagcgaccgatctctgccatg
ttcatcttctcagaggagaagcggcacaagctgcaggaggagcgtcccgagttggcagag
agcgaggtgacaaggctgctggcccgcatgtggaatgacctgtctgacaagaagaaggta
tgcatggcagcgtccgagatcggcagggggtgcttctcagaggctgccaggcagagccgg
acattctggttctttagctattttgaaatgatttctttgggattagtcaactga
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