Polyodon spathula (Mississippi paddlefish): 121302024
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Entry
121302024 CDS
T07273
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121302024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121302024
03036 Chromosome and associated proteins [BR:
pspa03036
]
121302024
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121302024
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121302024
PBAF complex
121302024
GBAF(ncBAF) complex
121302024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
121302024
NCBI-ProteinID:
XP_041087745
LinkDB
All DBs
Position
28:complement(6349339..6373281)
Genome browser
AA seq
507 aa
AA seq
DB search
MATRGGYPMNAGSPMNLGVNRMNPVNPMNSGQGGLQIPPAMQQNLGYRLMASGASPYHQR
QGMPPGRGMPMPGMGPVPGPSYGSGMLMRPGMLQQGMDPIRKRLLQQQHHGMHNQRRGVK
RRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKRKLRI
YISNTYTPAKPEGEEAEKVASWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKELYGPD
NHLVEWHRMPTTQETDGFQVKRPGDINVKCTVLLMLDHQPPQYKLDPRLARLLGVHTQTR
ANIMQALWLYIKNNKLQDSHEKEQINCNRYFRQVFNCNRMRFSEIPMKLAGLLQHPDPII
INHMISHSECVDPNDQKKTACYDIDVEVDDPLKGQMSSFLSSTTNQQEIAALEVKIHETI
ESINHLKTQRDFMLSFSNNPQEFIQDWLKSQCQDLKLMTETAGNPEEERRTEFYEEPWAH
EAVGRYIYSKVQQRRQELEQVLGIRLT
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaagaggagggtaccctatgaatgcaggtagtcccatgaatttaggggttaac
cgtatgaatcctgttaaccctatgaattcgggacaaggtggtcttcagatacctcctgcg
atgcaacagaatcttggatatcgccttatggccagcggcgcctccccgtaccaccagcgg
cagggaatgcccccaggtcgaggtatgccaatgccagggatggggcctgttcctggccct
tcgtacggttcagggatgctcatgaggcctggcatgcttcagcaagggatggaccccatc
cgaaaacgacttcttcagcagcagcatcacgggatgcataaccagagacggggagtcaag
cgacggaaaatggcagacaagatacttcctcaaaggattcgagagctggttcctgaatct
caggcctacatggacctccttgcctttgagcgcaagctcgaccagaccattgctcgcaag
cgcatggagatccaggaagctattaaaaagcctataacacaaaaacgcaagctacgtatc
tacatctccaacacctatacccccgccaaaccagagggggaagaggcagagaaggtggct
tcatgggagctgcgtgtggaaggaaagctcctggaagatcctggaaaacagaagaggaag
ttttcttccttctttaagagcttggtgattgagttggacaaagaactgtatgggccagac
aaccacctagttgagtggcaccgaatgcctacaacccaggaaacggacgggtttcaggtg
aagagacctggagatatcaatgtgaagtgcactgtcctgttaatgctggaccaccagccc
ccacagtacaagctggacccgcgtctggctcgtctcctgggcgttcacacccagactcgc
gccaacatcatgcaggctctgtggctgtacatcaagaacaacaagctgcaggacagccat
gagaaggagcaaatcaactgcaaccgctacttcagacaggtttttaactgtaatcggatg
agattttctgaaatcccgatgaaactggctggccttttgcagcatcccgaccccatcatc
atcaatcacatgatcagccattctgagtgtgtggaccccaacgaccagaagaaaacggct
tgctatgacattgacgtggaggtggacgaccccttgaaaggtcagatgagcagcttccta
tcctcaacgaccaaccagcaggagatcgctgctctggaagtgaagatccatgagaccatc
gagtcaataaaccacttgaaaactcagcgggatttcatgctgagctttagcaacaacccc
caggagttcattcaggactggctgaaatcgcagtgccaggacctcaagctgatgacggaa
acggctggaaaccctgaagaagagagaagaacagagttttatgaggagccctgggcacac
gaggctgtcgggagatacatctactcaaaggtacagcagcgcaggcaagaactggaacaa
gtgcttggaatccgcctcacctaa
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