Polyodon spathula (Mississippi paddlefish): 121302038
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Entry
121302038 CDS
T07273
Name
(RefSeq) glial fibrillary acidic protein-like
KO
K05640
glial fibrillary acidic protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121302038
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121302038
Membrane trafficking [BR:
pspa04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
121302038
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
121302038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
GAS
DUF1664
Suppressor_APC
WEMBL
BLOC1_2
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
121302038
NCBI-ProteinID:
XP_041087768
LinkDB
All DBs
Position
28:8340239..8350053
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AA seq
446 aa
AA seq
DB search
MSLETQRVSSYRRMFLGRGLKKQSSGQYSLGSSPCYGPILFSSSPRVSMGRTKSSALGLS
QDRVDFSLADALNGEYKETRTNEKVEMMDLNDRFASYIKKVRFLEQQNKVLAAELNQIRG
KGPTRLGHIYQQELQELRKQVDQLSTAKARTDIERDNLAQDLGNLREKLEDEINLRLEAE
NNLHSYRQDVDEAALNTVTLERKIEALHVEINFLNKIHDEELQEILQQMSSQQVHVDMDM
SKPDLTTALRDIRTQYESMASSNMQETEEWYRSKFSDMTDAANRNGEALRQAKQEANEYR
RQIQGMTCDLETLRGSNESLERQMREMEEQFAIESTNSQESVARLEDDINSLKEEMARHL
QEYQDLLNVKLALDIEIATYRKLLEGEESRITVPVQSFSNLQPRETSLDSKLSPEPPLKR
TVLVKTVEMRAGEIIKESMAERKELD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgagtctagaaacccagagggtgtcgtcctacaggaggatgtttctgggccggggcttg
aagaagcagtcgagcggacagtactccctgggcagctccccttgctacggccccatctta
ttctccagcagcccccgggtctccatggggcggacgaagagctctgcgctggggctgagc
caggaccgggtggacttctccctggccgacgccctcaatggcgaatacaaggagacccgc
accaacgagaaggtggagatgatggacctgaacgaccgcttcgccagctacatcaagaag
gtgcgcttcctggagcagcagaacaaggtgctggcggcagagctgaaccagatcaggggc
aagggaccgaccaggctgggacacatctaccagcaggagctgcaggagctgaggaagcag
gtggaccagctcagcaccgccaaggccaggactgacatcgagagggacaacctggcccag
gacctgggcaacctgcgggagaaattagaggatgagatcaatctgcgtctggaggctgag
aataacctgcactcctacagacaggatgttgatgaggctgcgctaaacactgttactctg
gagaggaagattgaagccctgcacgtggagatcaacttcctcaacaaaatccacgatgag
gagctgcaagagatcctgcagcagatgtccagccagcaggtccatgtggacatggacatg
tccaaaccggacttgactacagcgctgagggacattcgcacccagtatgaatccatggcc
agctccaacatgcaggagactgaggagtggtaccggtccaagttttcagacatgacggat
gcagccaataggaatggagaggcgttgcggcaggcgaagcaggaagccaatgagtaccgg
cgtcagatccagggcatgacctgcgacctggagacacttagaggaagcaacgagtctctg
gagaggcagatgcgtgagatggaggagcagtttgctatcgagtctacgaattcccaggag
tccgtggcacggctggaggacgacatcaacagcctgaaggaggagatggcaaggcacctg
caggagtaccaggacctgctgaacgtcaaactggccctcgatatcgagatcgccacctac
aggaagctgctggagggagaggagagccgaatcactgttcctgtccaaagcttctcaaac
cttcagccccgagagaccagcctggactccaaactgtctcccgagcctcccttgaagagg
actgttctggttaaaaccgtggagatgagagccggggagataatcaaggagtcgatggcg
gagcgtaaggagctggactga
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