Polyodon spathula (Mississippi paddlefish): 121302119
Help
Entry
121302119 CDS
T07273
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121302119 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121302119 (clp1)
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
121302119 (clp1)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121302119 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
ATP_bind_1
TniB
AAA_16
AAA_22
nSTAND3
GTP_EFTU
AAA_18
CbiA
ABC_tran
Motif
Other DBs
NCBI-GeneID:
121302119
NCBI-ProteinID:
XP_041087874
LinkDB
All DBs
Position
29:complement(1616363..1622975)
Genome browser
AA seq
426 aa
AA seq
DB search
MSAEESSKEERSGVRFDLEKETELRFEVESGEQVQLELLSGLAEVFGSELNRSKRYTFDS
GCKIAVFTWQGCAVQLSGKTEVAYVSRDTPMLLYLNTHAALEQMRQQADREGERGPRVMV
VGPTDVGKSTLCRILLNYAVRVGRRPTLVELDVGQGSISLPGTVGALCIERPADVEEGYS
VQAPLVYHFGSTSPGTNIKLYNKITSRLAAVFNQRCEVNRRACSSGCVINPCGWVKGSGY
QALVHAASAFEVDVVIVLDQERLYNELHRDLPYFVKTVTRPRRGGVVERSKDYRRESRDD
KVRDYFYGFRGGLYPHAFDVRFSDVRIYKIGAPTIPDSCLPLGMSQEDNQLKLVPVTPGR
DLVHHLLSVSTAEGGAGDSVIESSVAGFIVVTAVDPERQVLTVLSPAPRPLPKNILLIMD
VGRVYL
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggaggagagctcgaaggaggagcgctccggggtgcgtttcgacctggagaag
gagactgagctccgcttcgaggtggagtccggggagcaggtgcagctggagctcctgtcc
gggctggccgaggttttcggctccgagctgaaccggagcaagcggtacaccttcgattcg
ggctgcaagatcgccgtgttcacctggcaagggtgcgccgtgcagctgagcggcaagaca
gaggttgcctatgtgtctcgtgacacccccatgctgctgtatctgaacacacacgccgcg
ctggagcagatgagacagcaggcagaccgggagggggagcgcgggcctcgggtgatggtg
gtgggccccacagacgtggggaagtcgactctgtgccggatcctgttgaactacgcggtg
cgtgtgggccggcgccccacactggtggagctggacgtggggcagggcagcatctccctg
cccggcacggtgggggcgctgtgcatagagaggcccgccgacgtggaggaggggtacagc
gtacaggcacccctcgtgtaccactttggatcaaccagccctggaaccaacatcaaactg
tacaacaagatcacttcccggctggcggccgtgtttaaccagcgctgcgaggtgaatcgg
cgggcctgctccagcggctgtgtgatcaacccctgcggctgggtgaagggctcagggtac
caggccctcgtccacgcagcctctgccttcgaggtggacgtggtcatcgtgctggaccag
gagaggctctacaacgagctgcacagagacctgccctacttcgtgaagactgtgacacga
ccacggaggggaggggtggtggagcgctcgaaggattaccgccgcgagtcccgggacgac
aaggtgcgcgattacttctacggattccgtggaggtctgtacccccacgccttcgacgtt
cgcttctccgacgtgcgcatctacaagatcggggcgcccaccatccccgactcctgcctg
ccgctgggcatgtcccaggaagacaaccagctgaagctggtgcccgtgacccccgggcgc
gacctcgtgcaccacctgctgagcgtcagcacggccgaggggggcgcgggggactccgtg
atcgagagcagcgtggccgggttcatcgtggtcaccgccgtggatcccgagaggcaggtc
ctcaccgtgctctcccccgcgccccgaccgctccccaaaaacatcctgctcatcatggac
gtaggacgcgtgtacctgtaa
DBGET
integrated database retrieval system
