Polyodon spathula (Mississippi paddlefish): 121302302
Help
Entry
121302302 CDS
T07273
Name
(RefSeq) rab11 family-interacting protein 1-like
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121302302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121302302
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
121302302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
Motif
Other DBs
NCBI-GeneID:
121302302
NCBI-ProteinID:
XP_041088096
LinkDB
All DBs
Position
29:complement(5768271..5787882)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSLAEQSQQWYPTNVNVTVLQAHSLKAKGKNGTNDAYAIIQLGKEKFSTSVSEKSLAPVW
REEASFELPLFHQGNQERCTLRIVVMHRALVGLDQFLGEAVINLLELHKNKERNKTEWFK
LKSKAGKKEKERGEVHVNIQFMRNNMTASMFDLSMKDKSRSPFGKLKDKIRGKKDRGGFS
DSASAIVPPVSQVLTDSEGEEGGGGKEEKPKKSAKSKIKSIFGKSSNLQRSSLSQSMSVL
PSLQPLPERNAWLSGSRSSGLDVEPPLSPVPEAKVEGKPPLPKPSTHKHSLSADTKQLFS
GKKDPFSLLGGLRSKNDTMSHSSVCINGSHVYTEEPDPEPGLSGSLQNLSGGTNIGFTED
FTSLKSSDQAITESLKSKTLTSYKVQSTSATHRNQEELQEEEHAARKAEEKRLEEERKRW
QQQEEEERKRVEERNRQEEENRRRLAAEEEEKKRQEEIRKKEERKTVEKSESSKVSTLLS
MVRGRKDSLKNSDSVSPPETPVDKKTEPVPKRGGTQEFEEVPLRRKPLIPSKEEQDPDPH
LQEKERGVKNPSTPTTGFPSWATSKVTAVKPRLDVSLKDETKDRLPSHSMSPLSPISAPS
NPFTSPSSPTHFQDSSVPPGREVSSGQTPAGSLRMENKKSVPKTDASEGGEELQLSPGSV
LDLLSKASSSSISRSPVATSQFEKGRQSAASSSASVPEGAGLPARPVSVFDLLSKATSRT
SRASSSGSNSPLVSSVSESPIESINKPASDSDPLLKENFRPPSLFDCPTVSASISDSAFE
RMNKSASDSLLKDTSRPPSVSDTPCESIKISDSLPEANSRQSSLSDSPTVPASLCNPPFE
NATIPEPSDPGSEHFRTEREVPKPAPRAPKSSRTDAWGPTEPMASTPKPAPRTITVEQAK
KEESAAPILAPSPPSNKPGANSSPVEAEGRSSPSARSPDAINQPPPSQGAKGSSQGGGVT
GLFVRHLGVPSTSPGQDKSLDNSKQARSDQTAKDRDAQKDKQAAGVMKEKSKLPDKSSGE
LFPTKDKLAASDKEKDEKRAGESVAAKDRETLLHQSTREILNQKDEQTLQDRNAGEVQDK
QTDQNADDRLAALSNKSTGDRLKPKDKQTLSDISDSETQKLSVLSTKQTPSPPDKNVSRI
SSQKKKLAKPDQGTEETVTANTKQPLENKNAELEEDRQTLSDQTSEKDRWTPPTSVEDAD
GNTSALPAVQNKPAVISVRKRAERTEPSSTPRSNLEKQTGEEVAESQRKNKTESLPPPLS
SPLPPSPSSQTVVNSPAQPIGSGGKRLLRAWVSPSETQPIAMQKVPGSAQRRPHPVKPMS
SQDSQTSRMEKDLKSTGVKVAPSGRSGLLTSKFTDPSDAAPYSQLTHDELVALVVKQKEA
LSKKDCQIRDLEDYIDNLLVRVMDETPNILRNLSSKQAGRI
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtccttagcagagcagagccagcagtggtaccccaccaacgtgaatgtgacggtactc
caggcccacagcctgaaggctaaggggaagaacggcaccaacgatgcctacgccatcatc
cagctgggcaaggagaagttctccacctctgtgtccgagaagagcctggccccggtgtgg
agggaggaagccagtttcgagctgcctctgttccaccaggggaaccaggagaggtgcaca
ctgcgcatcgtggtgatgcacagggccctggtggggctggatcagtttctgggggaggct
gttatcaacctgctggagctgcacaagaacaaggagcgcaacaagacagagtggttcaag
ctcaagtcgaaggccggtaagaaggagaaggaaaggggggaggttcatgtgaacatccag
ttcatgaggaacaacatgactgccagtatgtttgacctctccatgaaggacaagtcgcgc
tcccccttcggcaagctgaaggacaagatccggggcaagaaggaccgggggggcttctct
gactctgcctctgccattgtgcctccggtctcccaggttctgaccgacagcgagggggag
gaggggggcggaggcaaggaagagaaacccaagaagtccgccaaatccaagatcaagtcc
atcttcggcaagtcgtcgaacctccagcgctcatccctctcccagtccatgtcggtcctg
ccctccctgcagccgctcccagagaggaatgcgtggctcagtggcagccggtcatctgga
ctggacgttgaaccgcctctgtctccagtaccagaggcaaaggtggagggcaagcccccc
ctgccgaagccctcaacccacaagcacagtctgagcgccgacaccaagcagctcttctct
ggcaagaaggaccccttctccctgctggggggcctgcgctccaaaaatgacaccatgtcc
cattccagcgtgtgcatcaatgggagccacgtgtacacggaggagcctgatcctgagccg
ggcctgagcggctctctgcagaacctatctggcggcaccaatattgggttcaccgaggac
ttcacctccctgaagagcagcgaccaagccatcacagagtccctgaagagcaagaccctg
accagctacaaagtgcagagcaccagcgccacccataggaatcaggaagaactgcaggag
gaggaacacgctgccaggaaggccgaggagaagaggctggaggaagagaggaagaggtgg
cagcagcaggaggaagaggagaggaagagagtggaggagaggaacagacaggaggaagaa
aacagacgaaggctggctgcagaggaagaggaaaagaaaaggcaggaggaaatccgcaag
aaagaggagcgcaagacggtggagaaatctgagagcagcaaggtgtccactctgctgtcg
atggtcagggggaggaaagactctctgaagaattcggacagcgtgagtccacccgagacc
cctgtagacaagaagaccgagccggtgcccaagagagggggtacccaggaattcgaggag
gtccccctgaggaggaagcctcttatcccttccaaagaggagcaagaccccgatccgcac
ctgcaggagaaggagaggggagtgaagaacccctccaccccgaccactggcttccccagc
tgggcaacgagcaaggtcactgcagtcaagcccagattggacgtgtctctgaaggatgaa
accaaagacaggcttccttctcattccatgtcgcctctgtcccccattagcgccccctcc
aatcccttcactagcccctcttcccctacccactttcaagacagctctgtgccacccggt
cgggaggtgagttccggtcaaactccagccggctccctccggatggaaaacaagaaatcc
gtccccaaaaccgatgcctccgagggaggagaggaacttcagctctccccaggctccgtg
ttggacttgctgtcgaaggcttcctccagctctatctctcggagcccggtggccacatcc
caatttgagaagggtagacaatcagcagcatcaagctctgcctctgttccagagggtgct
ggcctccccgcgagaccagtctcggtttttgacttgttgtctaaggccacctccaggaca
tctagagcttcctcctctgggtcaaattctccgcttgtatcttctgtttctgagtctccc
attgagagtatcaataagccagcctcagattctgacccgctgttaaaagaaaacttcagg
ccaccatctcttttcgactgtcccactgtgtcagcttctatttctgactctgcctttgag
agaatgaacaaatcagcctctgactcgctattgaaggacacctcaaggccaccctctgtt
tccgacactccctgtgagagtatcaaaatttctgattcccttcctgaggccaattccagg
caatcatctctttctgactctccaacagtgccggcctccctttgtaacccaccctttgag
aatgccaccattcctgaaccttctgatccaggttcagaacacttcagaacagaaagagag
gtgccaaagcccgcgcccagagcccccaaatcatccaggacagacgcgtggggccccacg
gagcctatggcctccacaccgaaacctgcgcccagaaccatcacagttgaacaggccaag
aaagaagagtctgctgctcctatccttgctcccagtccaccgagcaacaagccaggcgct
aactcttcacccgtagaggcagaagggaggagcagccccagtgccaggagcccagacgca
attaaccagccccccccttcacagggtgcaaaagggagttcacagggtgggggtgttact
gggttgtttgtcaggcatctgggagtcccttctacaagtccaggacaagacaagagcttg
gacaacagcaaacaggcacgctctgaccagactgcaaaagacagggatgcgcaaaaggat
aagcaggctgctggagtgatgaaggagaagagcaaactgcctgacaagagctctggggag
ctatttccaacaaaggacaaacttgctgcttcagataaggagaaggatgagaaaagggct
ggcgagtctgtcgcagcaaaggacagagagacgctacttcaccagagcacaagggagatt
ttaaaccagaaggatgaacagactcttcaagacagaaatgcaggggaagtgcaggacaaa
cagactgaccagaacgcagatgacagacttgcagcactgtcaaacaaaagcactggcgac
agattaaaaccgaaagacaaacagacactatcggacataagcgacagtgagactcagaaa
ctctctgtattatccaccaagcagaccccgtcacccccagacaaaaacgtgagcagaata
tcctcgcagaagaagaaactggcaaagcctgaccaaggcacggaagaaacggtcacggca
aatacaaaacagccacttgagaacaaaaatgcagaattggaggaggacagacagaccttg
tctgaccagacctcggagaaggacagatggacaccgccaacctcggtggaggatgctgat
ggcaacaccagcgcattaccggctgtgcaaaacaagcctgcagttatctctgtgaggaaa
agagcggagagaacagagccaagcagcactccaagatctaacttggaaaagcagactgga
gaggaggtggctgagtcccagaggaagaacaaaactgagagcctgccccctcctctatcc
tcccctctacccccctctccctcctctcagacggtcgtgaatagccccgcccagcccatc
ggctcaggagggaagaggctgctccgcgcctgggtttctccctcggagacacagccaatc
gcaatgcagaaagttcctggctccgcacagcgcaggccacacccagtgaagccgatgagc
tcccaggacagtcagacttcccgaatggagaaggatctgaagagcactggggtgaaggtt
gccccgtccgggcggagtggactactcaccagcaagttcactgacccctcagatgcggcc
ccctactcccaactaacacacgatgagctggtagctctggtggtgaagcagaaggaggcg
ctgtccaagaaggactgccagatcagagacctggaggactacatagacaacctgctggtc
cgagtgatggatgagacacccaacatactgagaaacctgtcgtccaagcaggccggccgc
atctag
DBGET
integrated database retrieval system
