Polyodon spathula (Mississippi paddlefish): 121302328
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Entry
121302328 CDS
T07273
Name
(RefSeq) PDZ and LIM domain protein 2-like isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121302328
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121302328
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121302328
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
PDZ_6
LIM
PDZ_2
DmmA-like_C
Motif
Other DBs
NCBI-GeneID:
121302328
NCBI-ProteinID:
XP_041088148
LinkDB
All DBs
Position
29:8119236..8146266
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AA seq
415 aa
AA seq
DB search
MAAQNPCVSSTALFPEHTSQVELCDIRSASDCKARISSNKNTHSLNGLPSCAISCKEQIG
NHAYKQLIPEVYSVLWGIFSVSAGSKAEVADLRPGDVILEINGQGTADMLNVEAQNKIKT
SKAQLLLTVDRSEPASPGQTNGILTPERLSSQFQEALQVSRDENQNYSKPLHRSPCSPEP
LAPRHSPGYSKPDTPPSARSFQSRSWSPVDKSFSPKVSLDSPRLQEPVADVRRNSLPRIP
TPPGWTPPRSPRERPLDSWETRASPSSSSDAAMHKFDRDSEVYKMIQENKESRTAPRQSS
TFRLLQEVLESDEQAATVRFPGALSPSPQKAVGSVAGVTKFHICEKCDTSIVTQAVRIVE
DRYRHPECYTCTQCGLNLKMRGHFWVGEEMFCEKHARERYQGPSGATPTTVHPKS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacaaaatccatgtgtgtcgtctacagctttgttccccgaacacacaagtcaa
gtcgagctctgtgacatccgttctgcctcggattgcaaagcacggatttcctccaataaa
aacactcacagtctgaatggcttgccatcttgtgccatctcatgcaaagaacaaatagga
aaccatgcctacaaacaactgataccagaagtatattctgtgctgtggggtattttttca
gtgagtgccggcagcaaggcagaggtcgctgaccttcgacccggtgatgtcatcctggag
attaatggtcagggcacagcggatatgctcaacgtggaggcccagaacaagatcaagacc
agcaaggcacagctgcttctcactgtggacaggtcggagcctgcttctcccggacagacg
aacgggatcctgaccccggaacgcttatcttcgcagttccaggaggcgctccaggtcagc
cgagacgagaaccagaactacagcaagcccttgcaccggagcccctgctcccccgagcct
ctcgcccctcgacactcccctggctacagcaagccagacacgccccccagcgctaggagc
ttccagtctcgctcctggtctcctgtagacaagagtttcagccctaaagtgtccttggac
tccccacgtctccaggagccagtggcagatgtgcggaggaactccctaccccgcatcccc
acccccccaggctggaccccccctcgcagccccagagagcgccccctggattcctgggag
acgagggcctcccccagcagcagctcggacgcagccatgcacaagtttgacagagactct
gaggtgtacaagatgatccaggagaataaggagtcccgcacagccccccggcaatccagc
accttccgcctgctgcaagaggtgctggaatctgatgagcaagcggcgacggtccgattc
ccaggagcgttgtctcccagcccacagaaagcagtgggctctgtcgccggggttaccaag
ttccacatctgtgagaaatgcgacaccagcatagtgacgcaggcggtgcgcatagtggag
gatcgataccgacaccccgagtgctacacctgcacgcagtgcggcctcaacctcaagatg
aggggacacttctgggtgggggaggagatgttctgcgagaagcacgcccgcgagcgatac
caggggccctcgggggccacccccacaaccgtccaccccaagtcctag
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