Polyodon spathula (Mississippi paddlefish): 121302405
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Entry
121302405 CDS
T07273
Symbol
tmc4
Name
(RefSeq) transmembrane channel-like protein 7
KO
K21988
transmembrane channel-like protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121302405 (tmc4)
03037 Cilium and associated proteins [BR:
pspa03037
]
121302405 (tmc4)
Transporters [BR:
pspa02000
]
Other transporters
Pores ion channels [TC:
1
]
121302405 (tmc4)
Cilium and associated proteins [BR:
pspa03037
]
Other cilia and associated proteins
Stereociliary proteins
121302405 (tmc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
121302405
NCBI-ProteinID:
XP_041088287
LinkDB
All DBs
Position
29:complement(2199311..2221288)
Genome browser
AA seq
728 aa
AA seq
DB search
MNDKAKKTKYISAEDRVKKVPRETGHADGGYQYYSPDSESLCSRASSLSYNRALYPLGAQ
GEHSARDETGEGVKALRELPLHLAQKRVLSKVSQMKIPVVTTWQSWKLSKAKSMKRFGEG
VQEASLYLKLWRKALLKIGGNFGSGIQSYFVFLRFLVLLNFVTFLLIGAFVVIPNIVFRT
LNLTSIETGSNASGKKTPYPSPQGLVNFNSYLLDLLSGTGFMELSSLFYGYYQNSEVGIS
SQFSYNVPLAYLLTCLFYILLSLTWIVLRSGSGFKLAVVTGDGDLSSYSMTVFCGWDFGL
EGKQAARLKQNSIRYELQMELEEDALRRNAASRTLAQRVGLYTLRGLLNLLVVGLILAAF
YCIYRASQQSSILQEDPSVKNTFFLLLLVQYLPSIVITAANFLVPTLCDIIILFERYSMT
TQIKLTLIRSVFLKLASLGVLLFSLWHQITCDGEPHKSACTSCEYNYAQYPCWETRVGQE
MYKLMIFDFITGVVVMLLIQFPRRMLVDHCSCKPLQLWGRQEFEVPDNVLGLVYAQTVVW
TGAFFCPLLPLINTVKFILLFYFKKLTLFQNCRPASRTFRSSTSNFFFLLVLLLGLGLAC
VPLGYSVALIHPSFGCGPFRSLTHMWDVVPQSLTSLPVTAQSFFNFLGSQAFAVPLFLLS
CLVFSYMAAMASVYSNNVAQLKAQLKLEGHDKQFLVKRILELTPANQKKSAGPSGSVIDA
SETRQLWE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacaaagcaaaaaaaacaaagtatatttcggcagaggatcgtgtcaagaaagtt
cctcgagaaactggacacgcagatggaggctaccagtattactctccagacagtgagtct
ctctgctccagagcaagctcactttcctacaacagagctctgtacccccttggagctcaa
ggggagcactctgccagagacgagacaggagagggggtgaaggcgctgagagaactgccc
ctccacctggcccaaaaacgtgtcctgagtaaggtcagtcaaatgaagattcctgtagtc
actacatggcagtcgtggaagctgagcaaagccaagtcaatgaagaggtttggagaggga
gtccaagaggcttccctttacctcaagctgtggaggaaagccttgctgaaaatcggaggt
aattttggaagtggtatccaatcctattttgtcttcctccggtttctggtgctgctaaac
tttgtgacgttcctgctgatcggagcttttgtggtgattcccaacatcgtgttcagaact
ctgaatctgacctctatcgagacggggagcaatgcatcaggtaagaaaaccccatacccc
tctcctcagggactggtcaacttcaacagctacctgctggacctgctgtcaggaacgggc
ttcatggagctgtcctccctgttctacggatactatcagaactccgaggtgggcatctcc
tctcagttctcctacaacgtgcccctggcttacctgctcacctgcctcttctacatcctg
ctcagcctcacctggatcgtgctgaggtctggctctgggttcaagctcgccgtggtcact
ggggacggagatctgagcagctacagcatgactgtgttctgtgggtgggacttcggactg
gaagggaaacaggcagcgaggctcaaacaaaacagcattcgctatgagctgcagatggag
ctggaggaagatgctctgcgcaggaacgcagcctctcgcaccctggctcagagagtcggt
ctctacacattgagaggactcctcaacctgttagtggtggggctcatcctggctgccttc
tactgcatctacagagcgtctcaacagtcttccatactgcaggaagacccctccgtgaag
aacaccttcttcctgctgttgctggttcagtacctcccctccatcgtcatcacagccgcc
aactttttggttcccaccctctgtgacatcatcatcctcttcgagcgctactccatgacc
acgcagatcaaactgaccctgatcaggtctgtgtttttgaagctcgccagtttgggggtg
ctcctcttttctctctggcatcagatcacctgcgacggggaaccccataaatcagcctgc
acatcctgtgaatacaactacgctcagtacccgtgctgggagactcgggttggacaggag
atgtacaagctgatgattttcgacttcatcacaggcgtggtggtcatgttgctgatacag
ttccctcgcaggatgctggttgatcactgctcctgcaagcccctgcagctctggggtcgt
caggagttcgaggtccctgacaacgtgttgggtctggtgtacgcacagacggtggtgtgg
actggagctttcttctgccccctccttcctctcatcaacacagtcaagttcatactgctc
ttttacttcaagaagctgacgttgttccagaactgccgtcccgcgagccggacgtttcgc
tcctccacctcaaacttcttcttcctgctggtcctgctgctggggctggggctggcctgc
gtacccctggggtacagcgtggctctgattcacccctcgtttggctgcggtccgtttcgc
tccctcacacacatgtgggatgttgtcccccagtccttgacctcacttcctgtgacggca
caatccttcttcaacttcctggggtctcaggctttcgccgtgccactcttcctgctgagc
tgcctggtgttctcctacatggcagccatggcatcagtgtacagtaacaacgtggctcag
ctcaaagctcagctcaaactggagggccatgacaagcagtttttggtgaagcggattttg
gagctgaccccagccaatcagaagaagtctgcgggtccttcaggcagcgtgatagacgcc
tctgagaccaggcaactctgggaatga
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