Polyodon spathula (Mississippi paddlefish): 121302408
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Entry
121302408 CDS
T07273
Name
(RefSeq) long-chain-fatty-acid--CoA ligase 6-like isoform X1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa00061
Fatty acid biosynthesis
pspa00071
Fatty acid degradation
pspa01100
Metabolic pathways
pspa01212
Fatty acid metabolism
pspa03320
PPAR signaling pathway
pspa04146
Peroxisome
pspa04216
Ferroptosis
pspa04920
Adipocytokine signaling pathway
Module
pspa_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
121302408
00071 Fatty acid degradation
121302408
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
121302408
09143 Cell growth and death
04216 Ferroptosis
121302408
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121302408
03320 PPAR signaling pathway
121302408
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pspa01004
]
121302408
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121302408
Enzymes [BR:
pspa01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
121302408
Lipid biosynthesis proteins [BR:
pspa01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
121302408
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of breast milk
121302408
Exosomal proteins of breast cancer cells
121302408
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
121302408
NCBI-ProteinID:
XP_041088297
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Position
29:3892262..3905918
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AA seq
727 aa
AA seq
DB search
MVGVLLVQCCRCNLLLLYSPVGSMQIQELLKSLGAQGSLRFPDVDEIQKFIRSLSTPSLI
GLGAFATLTAYWLATRPRPIRPPCDLEHQSVPVQGDPSCRRSALLKDETLLDFYYKDTKT
AYEMFQRGLRISGEGPCLGFRKPKGPYEWISYKEVSDQAEFLGSGLLNRGCLPSPDQFIG
VFAQNRPEWVIAELACYTYSMAVVPLYDTLGEEAMVHILNIAEISMVICDKPEKAGTLLV
NVEQSLTPDLKTIILMNSCNAALLERGRNCGVEILQFRDIMEQGRQNRKAPVPPGPEDLA
VVCFTSGTTGKPKGAMITHGNIASNTSSVIKILEGSFVIRQEDVTISYLPLAHMFERMIQ
VSMFCHGARVGFYQGDIQLLTDDIKTLKPTFFPVVPRLLNRIYDKILGSVASPLRRAVLQ
YAVRWKQAELSSGIVRNNSFWDLLLFNRIQASLGGNLRFILTASAPISPSVLTFLRAVLG
CLIFEGYGQTECTAGCTFSMPGDWTAGHVGAPLPCALVKVVDIKDMNYLASNGEGEICVK
GPSVFQGYLKDAEKTSEALDSQGWLHTGDVGKWLPNGALKIIDRKKHMFKLSQGEYIAPE
KIENVYLRSAALLQVFVHGDSLQSHLIGIVVPDPEVFPGWAQEKGIVGSYDELCSNQEVK
EAILEDMTRLGKEAGLKSFEQVKDLYIHPEMFSIFNGLLTPTMKARRADIRKRFQGEISR
LYSKTAL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggttggagttcttcttgttcagtgctgtagatgtaatctcctgttattgtattcccca
gtcggcagcatgcagatccaggagttgctgaagagcctgggggcccagggcagcctgcgt
ttcccagacgtcgacgagatccaaaagttcatacgcagcctgtccacgccgtccctgatc
gggctgggtgctttcgccactctcactgcttactggctggccacacgaccacggcccatc
cggccaccatgcgacctggagcaccagtctgtacctgtgcagggggaccccagctgccgg
aggtcggctcttctaaaggatgagactctgttggacttttactacaaggacacgaagacg
gcctacgagatgttccagagggggctccggatctcaggtgaaggaccctgcctcgggttc
aggaaacccaaaggtccctacgagtggatctcctacaaagaggtttcggaccaggctgag
ttcttgggctctggcctcctgaaccgaggctgtctgccttctccagaccagttcatcggg
gtcttcgcacagaaccgacccgagtgggtgattgctgagctggcctgctacacgtattcc
atggctgtggtccctctgtatgacactctgggtgaagaggcgatggtgcacattctcaat
atcgcggagatctccatggtgatctgtgacaagcctgagaaggcggggactctgctggtc
aatgtggagcagtctctgaccccggacctcaaaaccatcatcctcatgaactcgtgcaat
gccgccctgctggagagggggaggaactgcggggtggagatactgcagttccgagacatc
atggaacaaggtcgtcagaaccgcaaagcccctgtccccccaggtcccgaggatttagct
gtggtgtgctttacaagtggaaccacagggaaacccaaaggggcgatgatcactcacggg
aacatagcctccaacacctcgtctgtgatcaagatcttggagggttcgtttgtgatccgc
caggaagacgtcaccatttcatacctgccgctcgctcacatgtttgaaaggatgatccag
gtctccatgttctgtcacggtgcccgggtcgggttctatcagggcgatatccagcttctc
acggacgacatcaagaccctcaagccaaccttcttccccgtggtgcctcggcttctcaac
aggatctatgacaagatcctgggaagcgtcgcctcccctctgaggagggctgtcctgcag
tatgctgtgcggtggaagcaggcagagctgagcagcggcattgtgaggaacaacagcttc
tgggacctgttgctgttcaacaggatccaggccagtctaggtggaaacctgaggtttata
ttaaccgcgtcggctcccatctcccccagcgtgctcaccttcctccgggctgtgctgggc
tgcttgatattcgaaggttacgggcagactgagtgcactgccggctgcaccttctccatg
ccaggagactggactgcaggtcatgttggagccccgctgccctgcgccttggtgaaagtg
gtggatatcaaggacatgaactacctggcatcaaacggagagggggagatctgtgttaaa
gggcccagcgtgtttcagggctatttgaaggatgcagagaagacgtccgaggcgctggac
tcgcagggctggctgcacacgggggacgtggggaagtggttaccgaacggagccttgaag
atcattgaccggaagaagcacatgttcaagctgtcgcagggagagtacatcgcccccgag
aagatcgagaatgtgtacctgcgcagcgcggccctgctgcaggtgtttgtgcacggagac
agtctgcagtctcatctcatcggaatagttgttcccgatccagaagtgtttcctggctgg
gctcaggaaaagggaattgtgggatcgtatgatgagctctgcagcaatcaggaggtgaag
gaggcaatcctggaggacatgacaaggcttgggaaggaagccgggctcaagtccttcgaa
caggtgaaagatctttacattcatccagaaatgttcagcatcttcaatgggcttctcacc
ccgaccatgaaagccagacgtgccgacatccggaagcgtttccagggtgagatcagcagg
ctgtactcaaagactgctctttaa
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