Polyodon spathula (Mississippi paddlefish): 121302608
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Entry
121302608 CDS
T07273
Name
(RefSeq) FRAS1-related extracellular matrix protein 2-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121302608
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pspa04091
]
121302608
Lectins [BR:
pspa04091
]
C-Type lectins
Lecticans
121302608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
FAM176
Motif
Other DBs
NCBI-GeneID:
121302608
NCBI-ProteinID:
XP_041088546
LinkDB
All DBs
Position
30:complement(7654424..7683648)
Genome browser
AA seq
2769 aa
AA seq
DB search
MDVKMHLQQQRTAPLTFAFSCSLLLIAVALTGNAKAQHFDSFGLSYGFRSGPSEDAILVA
NNGIRVPFGKSVFIDPINDLVIQVQPGDRCSIIVLENDPLTQRPGQLTPKKFPCDFGHND
VKYSHFGSRSPSKDRVKLQLRYDTQTDTIIIPFMMEVEVVFTQLEILTRNMPLTVEKLLG
TSNPIDRKVLEFTYDRNSAVCKITTLTSASGLPRYGKLINDARAGKMVDCDEFVKLDVRY
QHTSVIRSPNRDYIPMVVELQDKEGNLLKQEYFQMMVRIREGEENTAPKPSFVAMMMMEV
DQFVMTAITPDMLAAEDTESDPDDLIFNITSSLSSEQGYIVSTDDRNLPITSFHQGDLKD
LKIAYKPPSEDSQVERIFQIEFEIVDTEGAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLY
EGQSRPLASSQNLQISDEDNLDEVRVTVIDGLRHGQLTILGSRRKFFTPADLDTGVVIYQ
HDGSDTYSDNIIFRMTDGKHEVEFLFPITIVPTDDEPPFINANTGLVLSKNEMVPISPFV
LSATDIDSEDSTIRFTIEPPFSTIGEVVLRQSEAPEDRSSWTFIADDEVFEKVVTEWLQQ
DIMSGKLFYRHVGPHSTSTVMDQFVFRVQDDNDPPNQSGENTFIAKILPVDDIPPELYSG
TSLNMIVQEYKLTHFRKKYLRYTDLDSDDRDLKYTIITPPTDTDENNPVVLGYIVLTDSP
DMIVTEFTQAQINHHKIAYKPPDLELGITAHVLQFQYTVEDTAGNSVEGTFTIFLQPVDN
KPPQITNTGFTVFERGTHIITSAELDTSDADTDSKYISFTLTQPPLHGHVQYTDTYITEG
DAFNLNDIASGRIAYIHDGYESTSDSFKLDVSDGVHVVTITIRVNVRPIDDEVPTIMLPA
GTIGSYIDVLENGATEITTNVIQGRDEDTDDLMLTFIVEDRPLLGEILVNGLPTERFTQG
DIINGVVVYAHTSGEIGLDKQEDYFNLTLSDLSDEWNVGGNKVQGVRVQVTILPVDSQAP
EVTVGQQFTVVEGEKNVIELEHVSAEDIDTASDDILCTIIVQPTSGYVENISPAPGSEKS
RSGTAISAFTMKDIRLGHIYYVQSIHKGVEPVEDRFTFRCSDGINFSQRHFFPIVIIPSN
DEKPEIFMREFVVMEGMNIVIDTPILNAVDSDIPADDLMFIITKPPKHGFIVNQLTTGTV
PVNNFTLDQIKESSSIVYEHDDSETTEDSFDVILTDGKHTVEKTVIIMVIPVDDETPRMT
INDGLEIEIGESKIITNKVLKATDLDSEDKTLTYIIRYGPGQGLLQKQTPSGSFENITVG
MNFTQNQVDNNLIVYFHNGQEGVRDLIKFDVTDGINPLIDRYFYITVGSIDMIFPDVISK
GVSLKEGGRVTLTTDLLSTSDLNSPDENLEFTITRAPVRGHLECTDTPGVPISSFTQLQL
AGNKVYYIHTSDDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVLTVHDLVVTEGE
NKLITPFELTVEDRDTPDHFLKLTITQVPVHGRLLYNSTRPVTSFTKQDLNENLISYKHD
GTESAEDSFSFTVTDGTHTDFYVFPDTIFETRKPQMMKISIISVDNGVPQIIVNKGAPTL
RILTTGHLGFMITSKALKAEDKDSTQISLKFKITVGPEHGYLINMGKGNDSITEFSQADI
DDMKICFVLREGDNATSDIFYFTIEDSETMCTWLILFFLLPSQVPKVQFKEPMYMGNEED
GQITAIVYRSGDISYKSTVRCYTRQGTAQVMMDFDERPNTDDAIISFLPGEIEKPCILTL
ADDTIHEEDEELRLVLGSPKSESPFGASIGEQKETLIKIKDNADKAIIKFGETKFSVSEP
KEAGQITVVKIPVLRLGDTSKVSIVRVHTKDGSATSGEDYHPVSEEIEFKEGETQHIVEV
EVLYDGVREMREAFTIHLKPDENMVAETQMNKAIIYIEETNSMADVTFPSVPHVVSLLLY
DDTARTSENPNAPAGYPVVCVTACNPKYSDYDKTGSLCSSEHINNTLTRYRWLVSAPTGP
DGVTSPMREVDFDTFFTSSKLITLDSIYFQAGSRVQCAARAVNSNGDEGLELMSPIVSAS
VEDGMCQPRIVGAVGAEPFSAKMRYTGPEDPDHPNLIKVTVTMPHIDGLLPVISTRDLSN
FELTLSPDGTRVGNHKCSNLLDYNEVKTRYGFLTDATKNPEVIGETSPYQYSSALRGSNT
LRFYRNLNLEACLWEFVSYYDMSELLTDCGGTIGTDGQVLNLVQSYVTLRVPLHVSYVFH
SPVGAGGWQHFDLQSELRLTFVYDTAILWKDGIGSPAEAELQGALYPTSMRINEEGRLVV
NFRTEARFRGLFVTSHSASSLSSMIMCADHPGLTFSLSLIRSEPTYNQPMQQWTFVSDFA
VRDYSGTYTVKLIPCTASPNQEYSVPVVCSPREPITFDLDIRFQQVSDPVAAEFSLNTQL
ILLSKKALWLSDGSMGFGQESDIAFAEGDVIYGRVMVDPVQNLGDSFICNIEKVFLCTGA
DGYVPKYNPAKAEFGCLADSPSLLYRFKIIDKAQPETQARSFGDVRFNALLAVDDPEALS
LVRQPGSDGFRVDSTAFFQVAAGREWYIHTIYTVRSRENSNRGIGKRSLEYQYHSVAQSR
DLHAVAQPRSKRATRGAPAITQDIGVENNRGTNIQHIALDRSNKKLHPQREDSEEGIIPR
ELHNKESEDNLVTIVGGLAGLLLTICLIVIIILLLKRRQKSKKKDTPKGSASTEPMMSHR
YQSSDSSEV
NT seq
8310 nt
NT seq
+upstream
nt +downstream
nt
atggatgttaaaatgcatttacagcagcaacgaactgcacctttgacttttgcattttct
tgcagtctgctgctgattgcagtggcgctgacaggtaacgcaaaggcacaacactttgac
agttttggattatcatacgggttccggtcgggaccgtctgaagatgctatattggttgcc
aacaatggaataagagtgccgtttggaaaatctgtttttattgatccgatcaatgatctg
gtgatccaggttcaaccgggagatagatgcagcattatagtactggagaatgaccctcta
acacagagaccgggacagctgacacctaaaaagtttccttgtgactttggccataatgac
gtgaagtattcgcatttcgggtctagaagcccttccaaggacagagtaaaattgcaactc
aggtatgatacccagactgatactattattataccgtttatgatggaagttgaggtggtt
tttacccagttggagatcctaactagaaacatgcctctgacagtggagaagctgcttggc
actagtaatcctattgacagaaaagttttggagtttacttatgatagaaattctgcggtg
tgcaagattactactttaacaagcgcaagtggactccccagatatggaaagctgattaat
gatgcaagagctggaaagatggtggactgcgatgagtttgtaaaactagatgtacgctac
cagcatacatctgtcatcagatcaccaaacagggactatatacctatggttgtggagctg
caggacaaagagggcaacctgctcaaacaagagtatttccaaatgatggtccgcattaga
gaaggggaggaaaacactgcaccaaagccaagttttgtagctatgatgatgatggaagtg
gaccagtttgttatgacagctataacccctgacatgctggcagcagaagacactgagtct
gaccctgatgatttaatctttaacatcacctcctcgctgtcttctgagcaaggctatatt
gtgagtactgatgatagaaatttgcccataacttcttttcatcagggggaccttaaagat
ttaaaaatagcctacaagcctccctcagaggactctcaagtggagaggattttccaaatt
gagtttgaaattgtggacacagaaggagctgtgtcagacccctttgccttcatgattgtt
gtaaagcccatgaatacgcttgcacctgttgtgacaaggaacactggtcagctgttatat
gaaggtcagtccaggccattggccagttcacagaatctacaaattagtgatgaggataac
ttggatgaagtcagggtgactgttattgatgggctgaggcatgggcagctgactatccta
ggttcaaggagaaaattcttcactccagctgaccttgatacaggtgtagttatttaccaa
catgatgggagtgatacgtacagtgacaacatcatctttaggatgacagatggcaaacat
gaagttgagtttctgtttccaattaccattgtgccaaccgatgacgagccaccgtttata
aatgccaacactggacttgtactgtctaagaatgaaatggtgccaatctccccatttgtg
ttaagtgctactgacattgactctgaagattccaccataaggtttacaattgaaccgccg
ttctccactatcggagaggttgtacttcgtcagtcagaagcccctgaagaccgctcatct
tggacatttatagcagatgatgaggtttttgaaaaagtagtgacagaatggctccagcag
gatattatgtcaggaaagttgttttataggcacgtgggacctcatagcaccagcactgta
atggatcagtttgtatttcgggttcaagatgacaatgaccccccaaaccagtcaggtgaa
aacacttttattgccaaaattctgccagtagatgacatccctcctgaactgtacagtgga
acttctttaaatatgattgtacaggaatacaaactgacacactttagaaagaagtacctg
cgctatactgatttagactctgatgacagagatttgaaatacactataattacaccacca
actgacactgatgaaaataaccctgttgtgcttggatatattgttttaacagacagccct
gacatgatagtaactgaatttactcaagcacaaatcaaccatcacaaaattgcttataag
cccccagacctagaattaggaatcactgcccatgtgcttcagttccagtacacagttgaa
gacacagctggaaacagtgttgagggtacatttaccatctttcttcagccagttgacaac
aagcctcctcagattactaacactggcttcactgtttttgaaaggggcactcacatcatc
acaagtgcagaactcgatactagtgatgcagacactgacagcaaatatatatcatttaca
ctaacccagcctccgctgcatggtcatgttcaatatactgacacttatatcactgaagga
gatgcattcaacttaaatgacattgccagtggcagaatagcttacatccatgacgggtat
gagtccactagtgattcatttaaattagatgtcagtgatggagtacatgttgtcacaatc
actatccgagtcaatgtacgtcccatagatgatgaagtaccaaccattatgctcccagct
ggcacaattgggtcctatatagatgttttggaaaatggagccactgagatcacaaccaat
gttattcagggaagagatgaggacactgatgacctcatgctgacttttattgttgaagac
cgccctcttcttggagaaatcttagtaaatggactccctactgaaagatttacacagggt
gacatcatcaatggggttgtggtttacgcacatacaagtggggagatcggccttgataag
caggaggattatttcaacttgaccctttctgacttgtctgatgaatggaacgtcgggggt
aataaagtccaaggagttcgagtacaggtcaccatccttccagttgatagccaagctcca
gaggtgactgtgggccagcagttcactgtagtagaaggtgaaaaaaatgtaattgagctt
gagcatgtaagtgctgaagatattgatactgccagtgatgacattctttgtacaattata
gtccagccaacttctggctatgtagagaacatctcaccagcacctggttctgagaagtca
cgttcagggactgccattagtgcttttacaatgaaggacattcgtcttggacatatttat
tatgtccaaagtattcacaaaggtgttgaaccagttgaagacagatttactttccgttgc
tctgatgggattaatttttcacaaagacatttcttccccattgttatcatcccatctaat
gacgaaaagcctgaaatctttatgagagaatttgttgtaatggaaggcatgaacattgta
attgacactccaattcttaatgctgtagattctgatatacctgctgatgatttaatgttt
attattactaaaccaccaaagcatggtttcattgtcaatcagttaaccacaggtacagtt
ccagtcaacaactttacccttgaccagatcaaggagagctccagtattgtttatgaacat
gatgactctgagaccacagaagacagctttgatgtcatacttactgatgggaagcacaca
gtggagaaaacagttatcattatggttattcctgtggatgatgaaacaccaagaatgact
attaatgatggactggaaattgagataggggaaagcaaaataattactaataaagtccta
aaggctactgatctggattctgaagacaaaacattgacctacattattcgctatggccct
ggccaaggtctactgcaaaagcagacaccttcaggtagctttgaaaatattactgtggga
atgaactttacccaaaatcaagtggacaacaatctaattgtgtactttcacaatggacaa
gaaggtgttcgtgatctcatcaaatttgatgtcactgatggcataaatcctcttattgat
agatacttttacatcacagttggcagcattgatatgatttttcctgatgtaatcagtaaa
ggggtgtctttaaaagaaggggggagggtgactctcacaacagatttgctcagcaccagt
gacctgaacagccctgatgaaaacctggaattcaccatcaccagagcccctgtacgtggg
catttggagtgcacagatacacctggagtgcccatttcttcatttacacaactccagcta
gctggcaacaaagtgtactacattcatacatccgatgacgaagtgaagatggacagtttt
gagtttgaggtcactgatgggtataacccagtgtttcgtactttcagggtgtccatcaca
gacgtggacaacaagaaacctgtgcttacagtgcatgacctagtggtcactgagggtgag
aacaaactcatcacaccctttgagctcactgtagaagacagagatacacctgaccacttc
ttgaagctcactatcacccaagtgccagtacatggccgactgctgtacaacagcactaga
ccggtaacctcatttaccaagcaggacttaaatgagaatctgattagctacaagcatgat
ggcacagagtccgcagaagatagcttctcatttactgtcactgacggaactcatactgat
ttctacgtctttcctgacaccatatttgaaacccgaaaaccgcaaatgatgaagatcagt
attatttcagtggacaatggtgtgccccaaatcattgtgaacaaaggtgcaccaactctg
aggattctgactactgggcaccttggctttatgattacaagcaaggccttaaaggcagag
gataaagacagcacccagatctccctgaaattcaaaatcacagtgggtcctgaacatggc
tacctcatcaacatggggaagggaaacgactctatcactgaatttagccaagctgatatt
gatgacatgaagatttgctttgtcttaagagagggagacaatgctacaagtgacatcttc
tacttcactattgaagacagtgaaaccatgtgcacctggctcatattgtttttccttttg
ccttcacaagtgccaaaggttcaatttaaagagccaatgtacatggggaacgaggaggat
ggacagattaccgccattgtgtaccgaagtggagatatcagctacaaatcaacagtacgg
tgttatactcgacaggggacggcgcaggtcatgatggactttgacgaacgaccaaacaca
gatgatgctatcatttccttcctgcctggggagattgagaagccatgcattttgacactg
gcagatgatactatccatgaggaagatgaagagctgaggctggtcctaggtagccccaaa
agcgagtcgccattcggagcttctatcggtgaacagaaggagacactgatcaaaatcaaa
gacaacgcagacaaggccatcattaagtttggagagacaaagttcagcgtcagcgagccc
aaggaagcggggcagatcaccgttgttaaaattccagtccttcgtctaggagacacttca
aaggtgtccattgtcagggtccacacaaaggacggctctgccacctctggagaggactac
caccctgtgtctgaagaaattgaattcaaggaaggagaaactcagcacattgtggaggtt
gaagttttgtacgacggggtgagagagatgagagaggccttcaccatacatctgaaacct
gacgagaacatggtagcagagacccagatgaacaaagcaatcatttacattgaagagact
aacagcatggctgatgtgactttcccgtccgtgccgcacgtcgtgtctctgctgttgtac
gacgacactgccaggaccagtgagaacccgaacgcacctgctggttatcccgttgtctgt
gtcacagcttgcaatcctaaatactctgactacgacaagacgggttccctctgttccagc
gagcacatcaacaacactctcacacggtaccgctggctggtgagcgcccccactggccct
gacggagtgaccagccctatgcgcgaggtggacttcgacacattcttcacctcttccaag
ctcatcaccctggactccatctacttccaggcaggctcccgggtgcagtgtgccgccaga
gccgtcaactccaacggggacgagggcttggagctgatgagccccatcgtctcagccagc
gtggaggacggtatgtgccagccccgtattgtcggggcggtgggagctgagcctttttct
gcaaagatgcgctacactggacctgaagacccagaccaccccaaccttatcaaagttact
gtcacaatgccacacattgatgggctgcttcccgtcatctccacgagagacttatccaat
ttcgaattaacgctgagtccagatggaacccgtgtcgggaaccacaagtgctcaaacttg
ctggattacaacgaggtgaagacccgctacggcttcctgacagatgccaccaaaaaccct
gaagtgattggagagacgtccccctaccagtacagctcggcactcaggggttccaacacc
ctccgcttctacagaaaccttaacctggaggcctgtctttgggagtttgtcagctactat
gacatgtctgagctcctcacagactgcgggggcaccattgggacagatggccaggtgctg
aaccttgtgcagtcctatgtgacgctgcgagtcccactgcacgtgtcgtatgtgttccat
tccccagtgggggcgggaggctggcagcacttcgacctgcaatcagagctccgcttgaca
tttgtgtatgacactgccatcttgtggaaggacggcatcggcagccccgcagaagctgag
ttacaaggtgctctctatccaaccagcatgcgtatcaatgaagaggggcgcctggttgta
aatttcaggacagaggcccgattccgtggtttgtttgtgacctcccattccgcatcctcc
ctctcctctatgataatgtgcgctgaccacccaggtcttaccttcagcctgagcttgatc
cgaagtgagcccacctataaccagcccatgcagcaatggacctttgtttctgattttgct
gttcgggattactcgggcacatacaccgtgaaacttatcccatgtacagcttccccaaac
caagagtacagcgttccagtagtctgtagcccaagagagcccatcacttttgaccttgat
atcagattccaacaggtgagtgaccctgtggctgctgagttcagtttgaacacacagttg
atcctgctgtcaaagaaagctctctggttatctgatggttctatgggattcgggcaggag
agtgatattgcttttgcagaaggtgacgttatctatggccgtgtgatggtagacccagta
cagaatctgggggactctttcatttgtaacattgagaaagttttcctgtgcactggtgct
gatggatatgtaccaaagtacaaccccgcaaaagctgaatttggctgtctggctgactcg
ccttctctcctgtacagattcaagatcattgacaaggctcagcctgagactcaagccaga
agctttggcgatgtgcgattcaacgcactgctggcagtggatgaccctgaagcactctca
ctagtgaggcagcctgggtctgatgggttcagagttgactccactgctttcttccaggta
gctgctggccgggagtggtatatccataccatttacacagtgcgttcaagagaaaactct
aaccgaggcatcggcaagaggagccttgagtatcagtaccactctgttgcgcagagccgt
gatctccatgctgtggcacagcctcgttccaagagagccaccagaggggctccagccatc
acacaggacattggtgtggaaaacaacaggggtaccaacatacagcacatcgcacttgat
cgcagtaacaagaaactgcatcctcaaagagaagactctgaggaaggcattatcccccga
gagctgcacaacaaagagtctgaggacaacctggtcactatagttggggggctggcgggc
ttgctgctcactatctgcctcatcgttatcatcatcctgctactgaaacgcaggcagaag
tcgaagaaaaaggacacaccgaagggatctgccagcacagagccaatgatgtcacatagg
tatcagagtagtgacagttcggaagtttga
DBGET
integrated database retrieval system
