Polyodon spathula (Mississippi paddlefish): 121302643
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Entry
121302643 CDS
T07273
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121302643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121302643
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121302643
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
121302643
RAVE complex
121302643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_Vps41
PEP5_VPS11_N
Beta-prop_WDR19_2nd
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
121302643
NCBI-ProteinID:
XP_041088594
LinkDB
All DBs
Position
2:complement(85059368..85129310)
Genome browser
AA seq
3112 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFAVGNINDQPFTAYASGCDIVILGSNFERLQIIPGAKHGNILV
GCVDCSMQQGKIAASYGNVVCIFEPVQLLNQKNTDSSKLNCQWQRSGQFVLESIVHNLAW
DPTGTHLLTGSSSLQLWSNVGLGSCIEEDEKQEMTINNGLGDWKCIWLSKTASSVHLMKF
SPDGDYFATAGKDDCLVKVWYHTSSWQSGVTSLNSPPEKAAQGEVNYSFVYLAHPRTVTG
FSWRKTSKYMPRGSVCNVLVTCCKDSVCRLWAETLLPSDSLLSGHGHNQSNDPVTSRSGL
KRHAPDKQRVHNALELNLKQFRRGRRSPAMAAHTGYLPHQQDTHEAHRKNSSVHANALCH
FHIAASINPATDIPLLPSITSMSLDDDDDDDEDQNGPFVVHWLNNKELHFTLSMEVFLQQ
LQKSLEQQPPETSGEETCQPDEAIYNKDEKKGSSEKSNYSNAGALPLPAAAIDHEIEILV
AEWNKNADMMFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLS
RSIVMYACTKNVDLAIQQGKQKPPGMIRSSSMLISSGNNKSSSSLKLSIFTPNVLMISKH
ADGSLNQWAVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRT
PEVDSMNDNRSLDNTMPRDPLSKRLSKVSVDATFQDPHAIYSELILWRVDPVGPLSFSGG
VSELARINSLHVSAFSNVAWLPTLIPSNCLGAYGNSPSACFVASDGHSLRLYQAVIEAKK
LLSELSNPDISKYVGEVFNIVSQQSTARPGCIIELDAITDLHGRETQLLHVFEEDFILGK
KMKGDGIQETEESTSSETGSQKGFSQKFYLVVIEYTQSGHSLLHMWHLHLKSVQITADDQ
HDKAEPESLLTPQDGQNSFSPEKSSSPLSQKYKACRTNLHSASRLTLISERVYSQQMKLP
DGVEIIRATPSAGHLSSCSIHPTGLAPYLLATSCSDGKVRFWRCRVDPESLLSKAEDSGQ
CSYTYIWEEWPLLIEDGFLSNSTVTVMGRPIEVSCCNTSRIAVAYKQTSSQYCGKDFTMH
VGIFECESTGGSQWILEQTLSLDEPNTMLDPRISIDRNLTVYNKQDVYLSSDIHVMSSAK
HLINLDWVSREDGSHILTVGIGSKLLMYGQRSGKMPEKGSKEGPAASALPVWEGAKDHSY
SRFVLLRSVDLVASFEGSLPLPVSLSWVRDGILVVGMDCEMHVYSQWQPPAKSELTTAEI
DCGSTTSLITSVRQGHTNGVNQKPAKKTLTRSMTSLAQKLSGKKTMYDLPVEMEDNGLFE
AAHDLFPTLPQYHPVQLMELMDLGKVRRAKAILSHLVKCIAGEVVALKDNSTNHERRLRS
LSISASGSTARDPKTFSKTENLDYTEIDSIPPLPLYALLAADEDTSHKAVDKSTNSILKK
ENREAQGHDYDDLFQTPSLGTDDLGLLDTDDEEDTKPKVIDLSQYSPTYFGPEHAQVLSS
HLLHSSLPGLTRMEQMSLMALADTIATTSTDVGESRHKSTGGETLDECGLKFILAMRLHT
FLLTSLPPAHRSQLLHQGLSTCHFSWAFHSEAEEELLNMLPAMQKGNPTWSELRAMGVGW
WVRNTNTLRRCIEKVAKAAFQRNNDPLDAAIYYLAMKKKAVVWGLYRSQGDSKMTPFFNN
NFSEDRWRKAALKNAFALLGKQRFEHSAAFFLLAGSLKDAVEVCLEKMNDIQLALVISRL
YESEFEVSSTYKNVLQKRILGYDSNERRFTLSQMHQDPFFRSMAYWILEDYSKALDTLLE
QPVREEDDAGPTGVGAMSSSCNPMVFNFYNYLRTHPLLLRRHFASSEKPSAKMGLTVENS
FADTINLVERRLFFTAAHAHFKAGCPMLALEVLSKMPKVVKKSKPLLSKESSSLSESTKD
SLLSPETKEEKDSDCDWSQTVVNGFGSVSHCLTNGQSESVLSLDWSQSSLIIQDEALDLN
WDSDKEHETDDEESGLSMKDIKTENNNIIIKGELDNSSAYTDSCTVGEIDVITPSEDSIA
AQLKFSACLKILTTELRTLSTGYEVEGGKLRYQLYHWLEREVVALQKACDYNPDLEYLEE
GIAGNVDETVTGQSAEDLVNQQRAVQQKEYLQKRRLWLLKNQPLFRIFLSYCSLHGSHGG
GLGSVRMELILLLQESQQESTTQTALSPVPHQTSIPLLLACTASAKTVVANPVVYLTNLT
HDILHTIIDLDSPPHPDSKNNKVYVMHTLAASLSACIYQCLCNSHSYSASHANQFTGIIY
QSFLLTHQHPVRTMSLDETVTPNTSPAQWPGIAALIRLLNSSGEEDQPGLTVLLCEILTA
VFLSLFVHGLATHSSNELFHIVAHPLNSKMWAAVFGGGARIPVKEQSPKKPTTGRPFSIP
NPHQVVVFSMECVGFSKSLTAISTHRPTSPTVTTVNDELEKHHKRFKLLSTKGASRESLQ
SSTSPVLNQEMPVFREKFIPPELSIWDYFIAKPFLPPSESRVEYDSEESQGSDDEDGDED
VYVSETQLQEHSNPNSYSWSLMRLAMVQMVLYNLKTFYPIAGHDLSELPVGSPLCHSILK
TLQRWEQVLLKRLEIFGGPPSKFISSHTLEDTVPPGPAILRHKALLEPTNTPFQSKQRSA
LPVKRLWQYLVKQDEVQETFIRNIFSKKRGQNELIEDHNENAKNTMMEEPNINKIEADLG
YRGGKARIIHKESDIITAFAINKANRNCIAIASTHDIQELDVSAILATQILTWVDDEVDL
ENKGSEDFLMIHAHDDLSCIQGTTPYTHSSPGTPINMPWLGSVQTGRGASVEYSAKLNGI
RKDLTKKELIKRNINNARRMASHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRTPGNSRV
TRIRFNYQGNKFGIVDADGCLSFWQTNTIGSTPKPYLTLQCHNKTANDFVFVGSSSLIAT
AGQSSDNRNVCLWDTLVTPANSLVHAFTCHDSGATVLTYAPKHQLLISGGRKGFICVFDL
HQRQQRQTFQAHDSPVKAVAIDPTEEYFITGSAEGSMKVWSLSTHSLIHTFINEHARQSI
FRNIGTGVMQIEAGLANHIFSCGADGTMKMRILPDRFSTMNGIWKNDVKCVI
NT seq
9339 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgcaccaagtacttacaggagctgtcaatccaggagataactgttttgcagtg
ggaaacattaatgaccagccttttacggcttacgcatcaggatgtgacattgtgatttta
ggtagcaactttgaaaggctacagatcatccctggggctaaacatggaaacattctggtt
ggctgtgtagactgttccatgcagcagggcaagattgcagcatcatatgggaacgtggtt
tgcatctttgagcctgtgcaactcttaaatcagaagaatacagattcatcaaaattaaac
tgtcaatggcagaggagtggtcaatttgtattggagtctatagtgcataatctagcatgg
gacccaacaggaacacatctcctgacagggtccagtagtttacagctctggtccaatgtt
ggcttaggatcatgtatcgaagaagacgaaaaacaggaaatgaccatcaacaatggcctt
ggcgactggaaatgcatctggctttccaaaactgcatcttcagtccatttaatgaaattt
tctccagatggtgattattttgctacagctggaaaggatgactgcctggtgaaggtgtgg
taccataccagcagctggcagtctggagtgacatcacttaatagccctccagagaaggca
gcacagggagaagtgaactactcctttgtgtacctggcccatccacgcacagttacaggg
ttttcatggaggaaaacaagtaaatatatgccacggggctctgtatgcaatgtcctagtc
acctgctgcaaagatagtgtctgtaggctttgggcagagacattgttgcccagtgacagc
ttattgtctggacatggccacaaccaaagtaatgaccccgttacatcaagaagtggtctg
aaaaggcatgcccccgacaaacagcgtgtacataatgctttggagctcaaccttaagcag
ttcaggagagggaggagatctcctgccatggctgctcacacaggctatctgcctcaccaa
caggacacccatgaggcccataggaagaactcaagcgtacatgcaaacgcactttgtcac
tttcacatagctgctagcatcaaccctgcaacagacattccgctacttccttccataaca
tccatgagccttgacgatgatgatgatgatgatgaagaccagaatgggccctttgtagtg
cactggctgaataacaaagagttacacttcaccttgtccatggaagtgttcttacagcag
ctacaaaagagtcttgagcagcagcctcctgagaccagtggagaggagacctgtcagcca
gatgaagcaatctacaacaaggatgaaaagaaaggatcttcagagaagagcaactattcg
aatgctggcgccttgcctttacctgctgccgctattgatcacgagattgaaatactggtt
gcggaatggaacaagaatgcagacatgatgttcagtattcatcccatggatggttcttta
ttagtatggcatgtcgactggcttgatgagtaccagcctggcatgtttcgccaagttcag
gtctcattcgtctctagaatcccagtagcatttccaactggtgatgccaattccttaagc
agaagcatagtaatgtacgcctgcaccaagaacgtggaccttgctattcagcagggcaaa
cagaagccccctggcatgatccgctcctcttcaatgttgatatcttctggcaacaataaa
tcttccagcagtctaaaactcagtatcttcactcccaacgtcctcatgatctcaaagcat
gcagatggatctctgaaccagtgggctgtcagctttgcagaggagtctgccttttctaca
gttctgagtgtttctcacaagtctagatactgtggtcatcgttttcacctcaatgatttg
gcctgccactcggtgttacctttgctgctaacaacatctcatcacaatgcactcaggacc
ccagaggtggacagtatgaatgataacaggagtcttgacaatacgatgccccgtgaccca
ctttcaaagaggcttagcaaagtatctgtagatgcaacattccaggaccctcatgcgata
tacagtgagctgatcctttggagagtggatccagttggaccactgtcattctcaggagga
gtttcagagctagccaggataaactcactgcacgtttctgccttctccaatgtggcctgg
ctccctacattgatccctagcaattgtttaggggcttatggtaactccccatctgcctgt
tttgttgcaagtgatggccattcactgaggttataccaggctgtcattgaggccaaaaag
ctcttaagtgagctctctaacccagacatttcaaaatacgttggtgaggtttttaacatc
gtaagtcaacaatcaactgcaaggccaggatgcataatagaactagatgccatcaccgat
cttcacgggagagaaacgcagctcctccatgtctttgaagaagactttatcttgggtaaa
aagatgaaaggagatgggattcaagaaactgaggaaagcacgtcatctgaaactggttcc
cagaagggattctctcaaaagttctacttggttgttattgaatacactcagagtggacac
tctttactacacatgtggcacctgcacctgaagtcagtgcagatcactgcagatgaccag
catgacaaagctgagcctgaatctctcctgaccccacaagatggccagaatagcttttct
cccgaaaagtcctcctctcccctctctcaaaagtacaaggcctgcaggactaacttacat
agtgccagcaggctaactctcatctcagaaagagtttacagccaacaaatgaagctgcca
gatggagtggaaattattcgagctacaccttcagcaggacacctcagttcctgttccata
catccaacaggccttgctccctatcttttggccacttcttgttctgatggaaaagttcgt
ttctggaggtgcagggttgaccctgagtccttattgtccaaagcagaggacagtggacag
tgcagctatacgtacatttgggaagagtggccactgttgattgaggatggttttctaagc
aatagtacagtaactgtgatgggaagaccaattgaggtcagctgttgcaacacaagccgc
atagcagtggcatacaaacagacgtcctctcaatactgcggcaaagactttacaatgcac
gtgggtatttttgaatgtgaatctactggtgggtcacagtggatccttgaacagacactt
agccttgatgaaccaaacacaatgttggaccccagaataagcattgatcgtaatttaaca
gtttataacaaacaagatgtgtatttgtcaagtgacatccatgtgatgtccagtgccaag
catctgattaacttagactgggtttcaagagaagatggatcacacatcttaacagtggga
attggctccaaactcctgatgtatggacagcgctctggaaaaatgccagagaaaggcagt
aaagaagggcctgcagcttcagctttgcctgtgtgggagggagcaaaagaccattcttac
tccagatttgtacttcttcggtctgtagatcttgttgcctcatttgagggatctcttccc
ttgcctgtttctctttcatgggtgcgagacggtatccttgtggttggtatggactgtgaa
atgcacgtttattctcagtggcaaccacctgccaaatcggaactaacaactgcagaaatt
gactgtggtagcaccacgtcattaataacttcagtaagacaaggtcataccaatggagta
aaccaaaagcctgccaagaagactctgacgagatcaatgacaagccttgctcaaaagcta
agtggaaagaagaccatgtacgatcttcctgttgagatggaagacaatggcctttttgaa
gcagcccatgacctattccccaccttacctcagtaccaccctgttcagctgatggagctg
atggacttgggcaaggttcgtagggccaaggccatcctctctcacttggtcaagtgcatt
gcaggggaagtagtggctctaaaggacaacagcacaaatcatgaacggcgcctccggtct
ctgtcaatcagtgccagcggcagtacagccagggaccccaaaacatttagcaaaacagaa
aacttagattacacagagattgactctattcctcccctccctctttatgcactgctagca
gcagatgaggatacttctcataaggcagtagataagtccaccaactccatcttgaagaag
gaaaaccgtgaagcccaaggtcatgattatgatgatctgttccagactcctagtctgggc
actgatgaccttggactcctggatactgatgatgaagaagatacaaaaccaaaggtcatt
gatctttcccagtacagccccacctactttggcccagagcatgctcaagttctctccagt
catctcttgcattctagtctacctggacttacccgaatggagcagatgtctttaatggct
ttagctgatacaattgcaaccactagcactgatgttggagaaagcagacacaaaagtaca
ggtggtgagactcttgatgaatgtggtctaaagttcattttagccatgcggcttcatacc
tttcttctaacatctttgccccctgcccatcgatcccagcttcttcaccaaggcttgtct
acttgccatttttcctgggcctttcattctgaggcagaggaggagctgctcaacatgctg
cctgcaatgcagaagggaaaccctacttggtcagagctgagagctatgggagtaggctgg
tgggtaagaaataccaacacactgcgaagatgcatagaaaaggtagcaaaagcagcattc
cagagaaataatgatcccttggatgcagctatttattatctcgctatgaaaaagaaggct
gtggtttggggtctatacaggtctcagggggactcaaagatgactccatttttcaacaac
aacttcagtgaagacaggtggaggaaggcagcactaaagaatgcctttgcactgttggga
aagcagcgctttgagcactctgcagctttcttccttctggctggttccttaaaagatgca
gttgaggtttgccttgagaaaatgaatgatattcagctggctctggtgatatcaaggttg
tatgagtctgaatttgaggtgtcctccacgtacaagaatgtactgcagaaacggatcttg
ggatatgattctaatgagagaagattcaccctctcccagatgcaccaggacccttttttc
cgcagcatggcttactggatactggaggattacagcaaggctcttgatactctactggag
caacctgtaagagaggaagatgatgcaggacccactggtgttggtgccatgtcctcctct
tgtaaccccatggtgttcaacttttacaattacttacggacccaccctcttttactacgc
cgccattttgcttcttcagaaaagccttccgccaagatggggctaactgttgaaaacagc
tttgcagatacaatcaacttggttgagaggaggttgttctttacagctgcacatgctcac
tttaaagcaggatgccctatgctagcactagaggtcttgtctaagatgccaaaggtggtc
aagaaatcaaagccgctgctgagtaaagaaagttccagcctctctgagagcaccaaagat
tctttgctctcaccagaaacaaaagaggaaaaagactctgattgtgattggtctcagaca
gtggtaaatggttttggatcagtttctcattgcttgacaaatggccagtcagaatctgtt
ctcagtttggactggagccagtcttctttgattattcaggatgaagctttggatttaaat
tgggacagtgataaggaacatgagactgatgacgaggaatctggcttgtccatgaaagac
atcaaaactgaaaacaacaacataatcatcaaaggggaactggacaatagttctgcctac
acagattcttgcacagttggtgagattgacgttataaccccttcagaagacagtatagct
gcccagttgaaattcagtgcatgtcttaagatcctaactacagaactccgaacgttatca
actggctatgaggttgaaggtggtaagcttaggtaccaactataccactggttagagagg
gaggttgtggccttgcaaaaggcttgtgattacaaccctgatttggagtatcttgaagaa
gggatagctggaaatgttgacgaaactgtcacaggacagtcagcagaggatctcgttaac
caacagagagccgtacagcaaaaggagtatcttcaaaaaaggagactgtggcttcttaag
aaccagcctctctttaggatctttctcagctactgcagtctccatgggtctcatggagga
gggcttggatcagtcagaatggaattaattctgcttttacaggagtcccagcaggaaagc
acaacacaaactgcccttagccctgtaccacaccaaacatctatacctctactattagca
tgtactgccagtgcaaaaacagttgttgctaatcctgtagtatacctgaccaacctcact
cacgacatactacatacgataatagacctggactccccaccacatccagacagtaaaaat
aacaaggtctatgtaatgcacaccttagcagcatcactttctgcctgtatctaccagtgt
ctttgtaatagtcacagttacagtgcctcacatgcaaaccagttcacaggaatcatctac
cagagctttctgctgacacatcagcatcctgtgagaacaatgagtttggatgagaccgta
acacccaatacatccccagcccaatggccaggtattgcagctctgatacgtcttctaaat
tcttctggagaggaagaccagcctggattaactgttttgctttgtgagattttaacagca
gtttttctgagtctctttgtccatgggcttgcaacacattccagcaatgagctctttcac
attgtagcccatccactgaacagcaagatgtgggctgcagtatttggaggtggagcccgg
attcctgtaaaggaacagagcccgaaaaagcctaccacaggaaggcccttttctatccct
aaccctcatcaggtagtagtgttctccatggaatgtgtggggttttctaaatcccttaca
gccatcagtacccatagaccaacaagtcccacagtcactactgttaatgatgaattggag
aagcaccacaagcgtttcaagctcttgtcaacaaaaggggcaagcagagaaagtctacag
agctcgacctcgccagtcttgaaccaggaaatgcctgttttcagagagaagttcattccg
ccggaacttagtatctgggactacttcatagcaaagccctttcttccaccatcagaaagc
agggtggagtatgactcggaggagagccaaggtagtgacgatgaagatggtgatgaagat
gtttatgtttcagaaacccagcttcaagaacattccaatcccaactcatatagctggtca
cttatgcgtttggccatggtgcaaatggttctttacaacttgaagactttctaccctata
gcaggacatgatctttcagagctgccagttggctccccactttgtcattcaattctgaag
acactgcagaggtgggagcaagtgcttcttaagaggctggagatttttggtggcccaccc
tccaaattcatctcctcacatactcttgaagatacagtaccacctggccctgccatcctt
cgccacaaagcactgttggagcccactaacactcctttccagtcaaagcaacgctctgca
ctcccggtgaaaaggctttggcaatacctggtgaagcaggacgaggtgcaggagaccttc
attcgaaacatattttccaagaaaaggggtcaaaatgagttgatagaggaccacaatgaa
aatgccaaaaatactatgatggaggaacctaacatcaataagatagaagcagatcttgga
tatcgtggtggaaaggcaagaattatccataaagagtcagacatcattacagcatttgct
attaataaggctaaccgtaattgcatagcaatagcttccactcatgacattcaggagctg
gacgtgtctgcaatcctcgcaactcagatattaacgtgggtcgacgatgaggtggacttg
gaaaataaaggcagtgaggatttcttgatgattcatgcacatgatgatctcagctgtata
caaggtactaccccatatacacacagcagtcctggaacacccattaatatgccctggctt
ggcagcgtgcaaactggcagaggagcatctgtggaatattcagctaaattaaatgggatc
agaaaggatttgacaaagaaggagttgatcaaaaggaatataaacaatgcaagaaggatg
gcctctcatccaacattaccgtactatctcacaggtgcacaagatggcagtgttcggatg
tttgagtggggtcactctcagcagattatttgctttcgaactccaggaaattcaagggtc
acaaggatacggtttaattatcagggtaacaagtttggcattgttgatgctgatggatgt
ttgagcttttggcagaccaacacaataggaagcacaccaaaaccatatctgaccttgcaa
tgtcataacaaaacagccaacgactttgtttttgtgggttcgtcctccttaatagcaact
gcaggacaatctagtgataacagaaatgtatgtttgtgggatactctggtgacaccagcc
aatagtctggtccatgcgtttacctgccatgatagtggggccacagtgctaacctatgct
ccaaagcatcagttgttaatctctggtggaagaaagggtttcatctgtgtatttgatctc
catcagaggcagcagaggcagacttttcaggcgcatgactcccctgttaaagctgttgct
atagatccaacagaggagtactttattactggttctgcagaggggagcatgaaggtatgg
agcttatccacccacagtctgattcacactttcatcaatgagcatgctcggcagtccatc
tttagaaacataggaactggggtaatgcagatagaggctggtcttgcaaaccacatcttc
tcttgcggagcagacggcacaatgaagatgaggattctgccagaccgctttagcacaatg
aatggtatctggaaaaatgatgtgaaatgtgtaatctaa
DBGET
integrated database retrieval system
