Polyodon spathula (Mississippi paddlefish): 121302648
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Entry
121302648 CDS
T07273
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121302648 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121302648 (nup98)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121302648 (nup98)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121302648 (nup98)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121302648 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
121302648
NCBI-ProteinID:
XP_041088599
LinkDB
All DBs
Position
30:7193527..7221353
Genome browser
AA seq
1830 aa
AA seq
DB search
MFNKSFGTSFGGGTGGFGTASNFGQNTGFGATGGFGTSAFGSSTTAAGVFGNKPVVTANP
QQIYISAGRGGGLFGSGTFSQPVTSSTSTGFGFGTPGGTTTSLFGSTNTGGGLFSQQSNA
FSQSKPTGFGTFGTSTSSGGLFGTTSTNSNPFGGTSTSLFGATGFGATQTTGTTLKFNAP
SGNDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPQNPMAGGTGVLF
GTPTATSSAATGLFGASTTNNGFSFGQNKTGFGASTGGFGTSTGSLFGPQQAAPGTSLFN
KSFSQATTTPNTGFSFGNTNTMGQANPSSMGLFGTTPASQSGGLFGSSTNTSTATAFGTG
TGLFGQPNVGFGNAPSQSLFGNKTAGFGTTTTSASSFGTGTGLFGNKPALTLGTNTNASS
FGFGANTAGSSLFGNKAGTGVLGTGLGTAFGGTVGAGHTSLFGNNQPKLGSTLGGVGSFG
TPGFNAAASNLAFGAPQQPVVLTDPNATAAQQAVLQQQINALAYSPFGDSPLFRNPMSDP
KKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLFDGLDDDEPSL
ASGSFMPRKSIKKLVLKNLNGSSLYSEMSREADDLASPSDYPENGQRSIEEDSRHQENER
DEEDPEVTKFYTNPIAKPIPHTPEGKQTVSMHDTIAELNVRNVLRNGLEASSEEVSLGED
SLQEEREEELDNQQPPHPAGIVLARVGYYTIPSMDELAKMTNENGECIVENFTIGRKGYG
SIYYPGEVNLTNLNLDEIVHFRRKEVIVYPDDQTKPPVGEELNRRAEVTLDGVWPNDKTT
CTQIKSLERLTEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDSDEEDE
VPPSRTDAKKLKTAAVLLPGQQPPPPAQQMALNGKLTPLPPSPGTLEQLGRVTELDSDMA
DITQEPPPDRMFEDDDYDEERQDGESPTEQEPVSASSHIASSLGINPHTLQIMKASLFVE
DDECDMFQDQRFGKFSHRMDESQEMGSPRILLTGSQGRPSVGGLLQSRFSSGSSLFSKPQ
EASSGLTPQRLHIPSVPEPSRLSLWPTLAPSFFMPTPAPEVPLRTVGTRRQPGLVPLDRS
VTLGKGKLLMDMALFMGRSFRVGWGPNWTLAHCGEQISQAKSLPQDHQTEAMGYGFLPKP
STFKQISEYPFKVNMEKISVSERDVEEDLSLYRRPLAIELKHSTIITDEPCPLIQPAQGV
DALHDYAEWISEVTKEPDSVDGTVRHWQLVWTLCEALWGSLGELDPDSEMQSEYRQRLQR
RRAFSFWLSRSAARRIEEEVALSQHKSHVEAIFSYLTGNRISEACRLAQQSGEHRLSLLL
SQASGSQHIRELLSMQLVDWNRLQTDSFIQEERLRIYALLAGIPVWQSSESYINVCSQLD
WKRCVAIHLWYMLPPTASVADALCKYEEAFQGSSECQKYACSPLPPYLDDSHLGLEESEE
TEESKRPLYDICFHLLKLYSDRHYDLQQLLDPSTVTFDRLDYMLSWHLWNVLQALNYSHL
SEQQQGLLHTSYAAQLESTGLWEMSIFVLLHISDAQQRERAVREMLRLHCSLVETRDSAE
KERFLTENLCLPVQWIHEAKATRACQEGDKHKEALHLFKAGHWNQCHKLVTQYLASDAII
NENHGYLLEFLEGLASPDRCTVIQDWDISGRVFLDYIHVLQTLDGIQKLEGPGYELERLH
TEVTSLCSRIELIQCTTARDRLAQSEMAKRLANILRVVLSLGWEGAPDLQRVPLRHLAPH
IGHLPMPEDYALEELRGLTQAYLRELIVSQ
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaatcgtttggaacttcttttgggggaggaaccgggggatttgggactgca
tctaattttggacagaatactggatttggagctactggtgggtttggaacttcagcattt
ggctctagcactactgcggctggagtcttcgggaataaaccagtggtgacagcaaaccct
caacaaatctacatttctgctggtagaggaggtggtctctttggttcaggtaccttcagc
cagcctgtaacgtcctccaccagcacagggtttggatttggaactccaggtggcaccacc
accagtctttttggcagcaccaacacagggggaggcctcttctcgcagcagagcaatgcg
ttcagccagagcaagcccaccggtttcgggacatttggcaccagcaccagcagtggtggt
ttgtttggtacaaccagcacaaactcaaaccccttcggagggacttctacgtctcttttt
ggggccacaggatttggtgctacacagacaactggaactactttaaagttcaatgcaccc
agtggaaatgacactatggttaagggaggagtcaccacaagcataaacaccaaacatcaa
tgcatcactgccatgaaggagtatgaaaacaaatccctggaggagctgcgtctggaggat
taccaggctggaaggaagggtcctcagaacccgatggcagggggaactggtgtgctgttt
ggtacccccacagccacatcaagtgctgccactggactatttggggcatctaccaccaac
aatggcttctcttttggccagaacaaaacaggctttggtgccagtacaggtgggtttgga
accagcactggtagcctgtttggtccgcagcaggctgcaccaggaaccagccttttcaac
aagtcctttagccaggctacaaccactccaaacacaggattttcctttggcaacaccaac
accatgggccaggccaaccccagcagtatgggtttgtttggaaccacgccggcctctcag
tctggagggctgtttgggagctcgaccaataccagcactgcgaccgcattcgggaccggc
acggggctctttgggcaacccaatgttggttttggcaacgctccctcgcagagcctcttt
ggtaacaaaacggctggatttggcaccactaccaccagtgcatcatcttttggtacaggt
actggactctttgggaacaagccagccctaactctgggaaccaacaccaacgcctccagt
tttgggtttggtgcaaatacagcaggcagcagtctgtttgggaacaaggctggtacaggt
gtactgggtactggactggggactgccttcggaggaactgttggtgctggacatacatca
ctgtttggaaataaccagccaaagttgggctccaccctggggggagtagggtcctttggg
actcctggatttaatgcagctgcaagtaacctggcctttggagcacctcaacaaccagtt
gtgctgacagaccccaatgccaccgctgcacagcaggctgtgttgcagcagcagataaat
gctctggcatactctccctttggagactcccctctgttcagaaatcccatgtcagaccct
aagaagaaagaagagcgcctgaagccaacaaatccagctgcccagaaagccttaacgacc
cccacacattacaagctgacaccacgacctgccacacgagtccgccccaaagccctgacg
tcctctggatcttccaaatctcagctgtttgatggactggatgatgacgagccctctctt
gccagtggctctttcatgcccaggaaaagcatcaagaagttggtgcttaaaaaccttaat
ggcagcagcctgtattctgagatgagcagggaggctgatgaccttgcttctccatctgat
tatccagaaaatggccagaggagcattgaagaagactcccggcaccaggaaaatgagagg
gatgaggaagacccagaggtgaccaagttctacaccaaccccattgctaagcccattcca
cacactccagagggcaagcagactgtctccatgcatgataccattgcagagctcaatgtg
cgcaatgtcttacgaaatggtctggaggctagcagtgaagaggtttccctaggggaggat
tcccttcaggaggagagggaggaagagctggacaaccagcagcccccacaccccgctggg
attgttctggctcgagtgggttattacaccatcccatccatggatgaattggccaagatg
acaaatgagaatggagagtgcattgtggagaatttcactattggccggaaagggtatggg
tccatttactaccctggagaggtgaacttgacaaacctgaacctagacgagattgttcac
ttccgcagaaaggaggttattgtttaccctgacgatcagacaaagccccctgtgggtgag
gagttaaaccgacgagcagaggtgaccctggatggagtctggccaaatgataagacgaca
tgcacccagattaagagtctggagcgactgacagaaatgaactacgagggacgactggag
aatgcttcacgcaagcagggtgctcgcttccttgagtataggcctgaaaccggttcttgg
gttttcgaggtagcccatttctccaaatatggactacaggattctgatgaggaagacgag
gttcccccatccagaacggatgccaagaagctcaagacagccgcagtccttctcccagga
cagcagcctccaccaccagcccagcagatggcgctaaatggcaaactcaccccactacca
ccgagccctgggacgttggagcagctggggagagtgacggagctggacagtgacatggct
gatatcactcaggagccgccacctgaccgcatgtttgaggacgatgactacgatgaggaa
agacaggatggagagagtcccacagagcaagagccagtgtctgcatctagtcacattgca
tcctcactaggcataaacccacacacactgcagataatgaaggcttccctgtttgtggag
gatgacgagtgtgacatgttccaggatcagaggtttggaaagttttcacacaggatggat
gagtctcaggagatgggatcaccgcggattctcctcactggttctcagggaaggccctca
gtgggagggttactccagtcaagatttagcagtggttcttcgcttttttctaaaccccag
gaagcttcctctgggttgaccccccagagactgcacataccatcagtgcccgagccatcc
cgtctctccctctggcccacgctggcaccatccttctttatgccaacacctgctcccgag
gtgcctctccgaacagtggggacccgtcgtcagccgggcctggtgcccctggaccgctct
gtgacccttggcaaaggcaagctcctgatggacatggcgctcttcatgggtcgctcattt
cgggttggttggggccccaactggacactggctcactgtggggaacagattagtcaagca
aagagtttgccacaggatcatcaaacagaagctatgggatatggcttcctgcctaaacca
tccacgttcaaacagatttctgaatacccgtttaaagtgaacatggagaaaataagtgtg
tcggaaagggatgtggaggaggatctcagtctctaccgcaggcccctggcaatagagttg
aaacacagcaccataatcacagatgaaccctgccccttgatccagccggcccagggagta
gatgcacttcacgactatgctgaatggatcagtgaggtgaccaaggagccagattcagtt
gatggcacggtgaggcattggcagctagtctggacactctgtgaggctttgtggggaagc
ctgggagaactggaccctgactctgagatgcagagtgagtatcgacagaggctgcagcgc
aggagggccttttctttctggctgtctcggagcgctgcccgcaggatagaggaggaggtt
gcactgtcccaacacaagagccatgtggaggccattttcagttatctgactggaaaccgc
ataagtgaggcctgtagactggcgcagcaatcgggtgagcaccggctctctctgctgcta
tctcaggcatctggcagccagcacatcagggagctgctctccatgcagttggtagactgg
aacaggctgcagactgactccttcatccaggaggaaaggctgcgcatctatgctcttctg
gctgggataccagtatggcagtcttcagaaagttatatcaatgtctgctcacagctggac
tggaagcgctgtgttgccattcacctctggtatatgttgccacccactgcctctgttgca
gatgctctgtgcaagtatgaagaagcttttcagggctcttcagagtgtcaaaagtatgcc
tgttcgccactgcccccttacctggatgattctcatcttggactggaggagtctgaagag
acagaagaatcgaagaggccgctttatgatatctgctttcacctgctgaagctgtacagt
gacagacactatgatctccaacagttgcttgacccctccactgtgacgtttgacaggctg
gattatatgctaagctggcacctgtggaatgtgctgcaggcattgaactactcacacctg
tctgagcagcaacagggcttgctgcacaccagttatgctgcccagttagagagtactggg
ctttgggaaatgtccatctttgtactactacatatctctgatgcacagcagcgtgagaga
gcagtaagggagatgctgcgcttgcactgctccttagtggagacacgggactccgctgaa
aaggagcgcttccttactgaaaatctctgtctaccagtgcagtggatacacgaggccaag
gccacgcgtgcatgccaggagggagacaaacacaaagaggcgctgcatcttttcaaggct
ggacattggaaccagtgccacaaactggtcacccagtaccttgcctcggatgctattatc
aatgagaaccatggctacctgctggagttcctggaggggctcgcgtctccagatcgctgc
actgttatccaagactgggacatctctggcagggtctttcttgattacattcatgtcctt
cagacattggatggtatacagaagttggagggtcctggctatgagttggagcgactacac
accgaggtgacctctctatgcagcaggatagagctcattcagtgtacaacagccagggac
aggctcgcccagtcggagatggctaaacggttggctaatattctccgagtggtgctgagt
cttggatgggagggtgctccagacctacaacgtgtcccgctccgccacttggcaccacat
attggccacttgcccatgccagaggactatgctttggaggaactccgtggtctcactcag
gcttatcttcgcgaacttattgttagccaatga
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