Polyodon spathula (Mississippi paddlefish): 121302755
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Entry
121302755 CDS
T07273
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121302755 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121302755 (exosc8)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121302755 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
121302755
NCBI-ProteinID:
XP_041088854
LinkDB
All DBs
Position
30:complement(7719892..7727110)
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AA seq
276 aa
AA seq
DB search
MAAGFKTVEPLDYHRRFLKENCRPDGRELGEFRTTTLNIGSITTADGSALVKLGNTTIIC
GIKAELAAPPVDAANKGYIVPNVDLSPLCSSRFRPGPPGEQAQAASQFIADVIENSDVIQ
KEDLCIVKGKLSWVLYCDIMCLDYDGNILDACTIALLGALKNVQLPEVHINEETDLAEVN
MKQKKPLNITKHPVACSFAIFDDTIIIADPTVEEENLSTGMITVVTDEDAKLCAVHKPGG
TALSGEKLQDCISRAITRNKEINKLLNEVLISVKPK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggattcaagacagtagaacctctggactatcacaggcgttttttgaaagaa
aactgcagaccagatggaagggagctgggagaattccgaaccaccacattgaacattggt
tctattacaactgctgatggttcagcgttggtgaagctggggaacaccaccattatttgt
ggcattaaagcagaacttgcagctccaccagtagatgcagctaataagggctatatagtt
cctaatgtggacctgtcaccactgtgttcatcgaggtttcgccctggtccaccgggagaa
caggctcaagcggccagtcagttcattgcagatgtcattgaaaattcagacgtgatacag
aaagaagatctttgcattgtaaaaggcaagctgtcttgggtcctgtattgcgatataatg
tgccttgattatgatggaaatattttggatgcctgcacaatagctttattgggagctttg
aaaaatgtccagttaccagaagttcacataaatgaagaaactgaccttgcagaagtgaat
atgaagcagaagaagccattaaatatcacaaaacatccagttgcttgttcatttgccata
tttgatgacacaattatcatagctgacccaactgttgaggaggaaaacctgtcaacagga
atgattactgtagtaacagatgaagatgcgaaactttgtgcagtccacaaaccaggagga
actgccttatcaggtgaaaaactccaagactgcatcagtcgagcaataacaagaaacaaa
gaaattaacaaactgctgaacgaagtgttaatcagtgtgaaaccaaaataa
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