Polyodon spathula (Mississippi paddlefish): 121302825
Help
Entry
121302825 CDS
T07273
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121302825
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121302825
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121302825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
Ank_2
DEAD
Ank
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
AAA_23
AAA_7
PhoH
Sigma54_activat
AAA_29
ABC_tran
SRP54
Ank_5
Motif
Other DBs
NCBI-GeneID:
121302825
NCBI-ProteinID:
XP_041089008
LinkDB
All DBs
Position
2:complement(86221756..86260027)
Genome browser
AA seq
1431 aa
AA seq
DB search
MSRPSSLSPRPGMSQSSQSGSSRARGLKDIRIDEEVKIAVNIALDRFRYSDQKEMEFPSS
LTSTERAFIHRLAQSLGLISKSRGKGTARFLTIKKKDGSEAAQSVMNFNLSHNTKHVVRS
LLQRFPVTNKERTDLLPKTERGSSLALEAESVRDKNRTSGRLNNGIPQVPPRRGESDLDS
FRRTLPVYERREEIVKIIKENRVVLIVGETGSGKTTQVPQFLLDDSYANGNPCRIFCTQP
RRLAAIAVAERVAAERGEKIGQTIGYQIRLESRVSPKTLLTFCTCGVLLRTLMAGDATLS
TVTHVIVDEVHERDGLSDFLLIKLRDMLQNHSSLKLILSSAALDVNLFIRYFGSCPVIYR
NFIAFEVKELFLEDILRTTGYTNKDMMKYKKEKQKEEKQQTSLTEWCKVKDSNTRPEQQR
ERTTSCPIEENYLLDDGGDSVFSQLSEKDVNSLEPWLLKEMDSCISDIFLNQDADAFVQL
FNLILSENVSVDYRHRETSATPLMVAAGRGFLSQVEQLLSMGANVNFKASNGWTALDWAK
HFNQAEVVDLLESYISSLEAGHLDESSLVQSESGELTAEDREILKAYHHSFDDEKVDLDL
IMHLLYNICQSSDDGAVLIFLPGYDEIVGLRDRILYDDKRFSDYTQRYQIFTLHSNMQTS
DQKKVLKPSPAGIRKVILSTNIAETSITVNDVVFVINAGKVKEKSFDALNHVTMLKMVWI
SKASAIQRKGRAGRCRPGVCFHLFSRLRFKNMLEFQVPELLRMPLQELCLHTKLLAPITC
PIADFLAKAPEPPPALIVRNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHFGKMVLCA
VVLKCLDPILTIACTLAYRDPFVLPVQAAQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQ
KARSDGWERVFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLNSENW
AVVKAALVAGMYPNLIHVDRENVMLMGSKEKKVRFHPNSVLSQPLYKKIPPANGQAAAVQ
SLPTDWLIYDEMTRAHRIASIRCCSVVTPFTVAIFGGSAKLPSTALQEPSIQRVDGVNDS
SDSEMEDRSTANMATLKIDEWLNFKLERETANLVFHLRQKWHSLFLRRIRAPSKPWSQVD
EATMRALVSVLITEEHVAGLQQPTGIGQRPRPMSSEEPPQLSSWRATNSRESSADTEFSD
ETSNVERAQMMSPSPAFSQPKGYKNRGILHPKKSSGDRSNQSSVKTTDSNSYPSPCASPS
PPSSGKCSKSSSPRPNTPFRYFIMKSSNLRNIEISQQKGIWSTTPSNELKLNRSFLESSI
VFLVFSVQGSGHFQGYARMSSEIGQERSQEWGSTGLGGVFKVEWIKKESLPFQHAHQLLN
PWNDNKKVQISRDGQELEPQVGGQLLQLWEQASLIGKTLQIDSRLGVLGES
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggccaagtagcttgtctccaaggccaggcatgtcccagtctagccagtctggt
tcttcaagagctcgagggctgaaggatatccggatcgatgaagaagttaagatagctgtg
aacattgcgctggacagatttcgatacagtgatcaaaaagaaatggaatttccatcttcc
ttgactagcactgaaagagcgtttattcatcgtcttgcacagtctttgggcttgatttcc
aaaagtagaggaaaggggacagctaggtttcttacaataaagaagaaggatggatctgag
gcagcacagtctgtaatgaacttcaacctttcccacaacactaaacatgtagtgcgaagt
ttgcttcagagatttccagtcactaacaaagaacggactgatcttctgcctaaaactgaa
cgcggaagttcactggctcttgaggctgaaagtgtcagagataagaacaggacaagcgga
cgcctcaacaacgggatcccccaggttcctccgcggagaggggagtcggatttggattcc
ttcaggcgcacactgccagtctatgaaagacgagaggaaattgtaaagattataaaagaa
aacagagtggtgttaatagttggcgaaactggatctggaaagactacacaggtacctcag
tttcttcttgatgattcttatgcgaatggaaatccgtgccgtatattctgtactcagcca
aggaggctagcagccattgctgtggctgaacgagtagctgcagagagaggggaaaagatt
ggccagacaattggctaccagatacgactggaaagcagagtttctccaaagacactgcta
accttctgcacttgtggagtacttctgcgaactctgatggcaggggatgccaccctttca
actgttacacatgtaattgtggatgaagtgcatgagagagatggactaagtgatttcctg
ctgataaaattaagggatatgttgcagaaccactcttctttgaagctcattctttctagt
gctgctcttgatgttaatctgtttataagatactttggctcctgtccagttatttacagg
aatttcattgcatttgaagtaaaggaactatttctggaagacatcttacggacaacaggt
tacacaaacaaagatatgatgaaatacaagaaggaaaagcaaaaagaggaaaagcaacag
acgtcacttactgagtggtgcaaggttaaggacagcaacaccaggccagagcaacagagg
gaaagaaccacctcctgcccaatagaagaaaattacttgcttgatgatggtggagacagt
gtttttagtcaactgagtgagaaagatgtgaactccctggagccttggctgctgaaggaa
atggattcctgcatctctgacatcttcctcaatcaagatgctgatgcttttgtccagctg
tttaacctcattttaagtgaaaatgtcagcgttgattacagacacagggaaaccagtgca
acaccactgatggttgcggcaggcagaggattccttagtcaagtggaacagcttctcagc
atgggtgccaatgtgaatttcaaagcatccaatggctggacagcattagactgggctaag
cacttcaaccaggctgaggtagtggatctgcttgaatcttacatctcatcattagaggct
gggcatctggatgaaagctccctggtccagagtgagagtggagagctgactgctgaggac
agagagatcctgaaggcttaccatcacagcttcgacgatgagaaagtggatctggacctg
atcatgcatctcctatacaacatatgtcagagctctgatgatggtgcagttttaattttc
ttgcctggatatgatgaaatagtaggacttcgagatcgtatcctatatgatgataaaaga
ttttcagattacacacagaggtatcagatttttacactccactcgaacatgcagacatct
gatcaaaagaaagtgcttaaaccctcacctgctggcattcgtaaagttattctttcaacc
aatattgcagaaaccagcatcactgtcaatgatgttgtctttgttattaatgctggcaaa
gttaaagagaaatcctttgatgctctcaaccacgtgacaatgttaaaaatggtgtggatt
tcaaaggcaagtgcaatccagagaaaaggaagagccggtcgctgtagaccaggtgtatgt
ttccacctgttcagcagattacgattcaaaaacatgttggagttccaggttccggagctt
ctcaggatgcctcttcaggaactgtgtctgcacactaaactgctggctcccatcacctgt
ccaatagccgacttccttgccaaagcacctgagcctccaccagctctaattgtcaggaat
gctgtgcagatgctcaagacaatcgatgccatggacccctgggaagacttgacggaactc
ggataccacctagctgatctcccagtagaaccgcactttggaaagatggtcttgtgtgct
gtggtcctcaagtgtcttgatcctattctcacgatagcctgcacgctggcctacagagat
ccctttgttctgccggtacaggctgcacagaagagggcagcaatgttatgcaggaagcgt
ttcactgcagggaccttcagtgaccatatggctctccttcgagctttccaggcatggcag
aaagctcgcagtgatggctgggaaagagtattctgtgagaagaactttttgtcccaagcc
accatggagattatcatagggatgaggacacagcttcttggacagctacgagcgataggt
tttgttcgggcaagagggggaggcgacattcgagatgtgaaccttaactctgagaactgg
gcagttgtaaaagctgccctggtggctgggatgtatcccaacctcatccatgttgacagg
gaaaatgtcatgctgatgggatcaaaggagaagaaagtcagatttcatcctaactctgtt
ctgagccagccactgtataaaaagattcctccagcaaatggacaagctgcagctgtccag
tcacttccaacagactggcttatttatgatgaaatgactagagcccacagaatcgctagc
attagatgctgttctgtagtgactccatttacagtggctatctttggagggtcggctaag
ttgccaagcactgctttacaggagccttcaatacaaagagttgatggtgtgaatgacagc
agtgacagtgagatggaagaccgatccactgctaacatggccactctaaagatagacgaa
tggctgaatttcaaattggagcgagagactgccaatctagttttccacctgagacagaaa
tggcacagtttgttcctgcgtcgaatacgggcgccttcaaagccctggtctcaggtggat
gaagcaactatgagggcgcttgtgtctgtcctgatcactgaggagcatgtagctggcctc
cagcagcctactgggattggtcagcgaccccgtcccatgtcctcagaagaacccccacag
ttatcatcttggagggccaccaacagcagggagagttctgcggatactgagttttcagat
gagacgtcaaatgtagaaagggctcaaatgatgtctccatctccagcattttcccaaccc
aaggggtacaaaaacagggggattctgcatcctaaaaaaagctctggtgacaggtcaaat
cagtcatctgtgaaaactacagacagcaacagttaccccagtccctgtgccagtccttca
ccaccatcctcagggaagtgttctaaatcttcctctcccagaccaaatacgccattccgt
tactttattatgaagagcagtaacctacgtaacattgagatctcccagcaaaagggaatc
tggtccacaactcctagtaacgagctcaagctgaaccgatccttcttggagagcagcatt
gtctttctggtgttttctgtgcaaggatctggacactttcagggttatgcaagaatgtcc
tcagaaataggacaggagaggagccaggagtggggctctacaggtcttgggggagttttc
aaggtggaatggatcaagaaggagagcctcccttttcagcatgcacaccagctgcttaac
ccctggaatgacaataagaaagtgcagatcagcagagatgggcaggagctggagcctcag
gttggtgggcagttgctacaactttgggaacaggcttctttgataggaaaaacactacaa
atagactccaggcttggcgtactgggagagtcttaa
DBGET
integrated database retrieval system
