Polyodon spathula (Mississippi paddlefish): 121302858
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Entry
121302858 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121302858
03036 Chromosome and associated proteins [BR:
pspa03036
]
121302858
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121302858
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
121302858
SLIK complex
121302858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Chromo
Helicase_C
CHD1-like_C
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
121302858
NCBI-ProteinID:
XP_041089084
LinkDB
All DBs
Position
2:complement(86460243..86490015)
Genome browser
AA seq
1817 aa
AA seq
DB search
MDGRSDQESVSNSSGESSQSDEESGSGSGSGSGSGSGSSSGSSSDGSSSQSGSSDSGSGS
DSGSQSESESEGSKEKKQENKTAEIDGAEFWKSNPSILAVQRSAMLRKQQQQQQQSSSDS
GSDEDSSSSDESDDDSSSQNKRKKKRKDEDWHLSGSRPESRSGSNSGSDSGSDSSDDQGG
NSDESVSDFEPNHKVKSRKPPNRTNVRNGKKGKTQKKKLPMGSSDDDNYDKGPRRQATVN
VSYKEDDEMNTDSDDLVEVCGEDVPPPEDDEFETLEKVMDMRVGRRGATGATTTVYAVEA
DGDPNSNFVQGKDPGDNQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNFKKKNQEM
KRWIKTSSPEDVEYFNCQQELLDDLHSQYQIVERIIAHSNQKSAAGYPDYFCKWQGLPYS
ECSWEDGALISRKFQKCIDDYMSRNQSKTIPFKDCKVLKQRPRFVPMKKQPSYIGGEGLE
LRDYQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLVVVPLS
TLTSWQREIQLWAPLMNVAVYLGDINSRSMIRTHEWMHPQTKRLKLNILLTTYEILLKDK
SFLGNVNWAFIGVDEAHRLKNDDSLLYKTLIEFKSNHRLLITGTPLQNSLKELWSLLHFI
MPEKFSSWEVFEEDHGTGRDSGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSA
IQKQYYKWVLTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEAL
QHLIRSSGKLILLDKLLLRLKERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKG
EMRRQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR
IGQKKQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPF
NKEELSAILKFGAEELFKEQEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFK
VANFSTMEDEEIDLDADRKKKSWDDIIPEEQRRRLEEEERQKELEEIYLLPRMRNCAKQA
NFNGNEGRRGRNSRNSRNRRYSGSDSDSISGRKRPKKRGRPRTIPRENIKGFSDAEIRRF
IKSYKKFGGPLERLDAIARDAELVDKSEMDLKRLAETVHNGCIKTLRENSSGPEKTGGGR
RGKVKGPTFRISGVQVNAKLVISHEEELAPLHKSIPADAEDRKRYSIPCHSKAAHFDVDW
GKEDDSNLLIGIYEYGYGSWEMIKMDPDLNLTQKLLPDDPDKKPQAKQLQTRADYLIKLL
SKDLARKEAQRLAGTANSRKRKPRSKKNKVAKPVKVEEVVKSDLSPPPSEKSSEEEETEE
RKEEVAPAKPVNRRAKAEKVKKSSDDDDDGGDDDEPEPETVIKNEPEEKEAKEKDNKKEK
KDKKEENKDVKEKRELKEKKEMKAEPVLKKEEIKEEKITEVKVEMKEKLKKVTDAPVHIT
ASSEPVPIAEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKI
GDHITECLKEYTNPELIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAGDLN
SSLNIHNIKQEDIEKLKENSHHDDNSRESYTSERHHSSHYNDHHKDRQGDSYRKSDSSRK
RPYSSYSNGKDHRDRDHYRQDSRYYSDSKHRKLDDHRSRDHRSGLEGSMKERSRSDHHSH
SDHRSHSEQRSSSEYGHHKSSREYRYHSDWQMDHRASGSGPRSPPYDSRSPLGHRSPFEY
SSDHKSTPEQIWSSRKT
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atggatggacgcagtgaccaggaaagtgtgagcaacagcagtggggaatcaagccaatct
gatgaggaatctggctctggatcaggctctggttcaggttcaggttcaggttccagctct
gggagcagcagtgatggaagcagcagtcaatcgggaagcagcgactcaggcagtggttct
gactctggcagccagtcggaatcggagtccgaagggtcaaaggaaaagaaacaagaaaac
aaaactgcggaaatagatggggcagagttttggaaatcaaatccaagtatcttggccgtg
caacgatcggctatgctcaggaaacagcaacagcagcaacagcagagttcatcagacagt
ggatcagatgaggattcatccagcagtgacgaatcagatgatgattcttcaagtcagaat
aaaaggaaaaagaagcgtaaagatgaggactggcatttgtctggttccaggccagagtcc
aggtctggatcgaattctggttccgattctggttctgattcttcagatgatcaaggagga
aacagtgatgagagtgtgtctgacttcgagcctaatcacaaagttaaaagcagaaagccc
ccaaacaggacaaatgtaagaaatggtaaaaaaggcaaaactcagaaaaagaagctacca
atgggttcctcagatgatgataattatgacaaggggccccgtcgtcaggccactgtaaac
gtgagctacaaagaggatgatgaaatgaacactgattctgatgatttggtggaagtctgt
ggtgaagatgttcctcctcctgaagatgatgaatttgaaacgttggaaaaagtgatggac
atgagggttgggaggagaggagctactggtgcaaccacaactgtgtatgcagtggaggca
gatggggatccaaattctaactttgtacaaggcaaagaccctggagacaatcagtatctg
attaaatggaaaggatggtctcacattcacaacacctgggagaccgaagagaccctcaag
cagcaaaatgtcaaaggcatgaaaaaactggataactttaagaaaaagaatcaggaaatg
aagcgatggataaaaacatcatctcctgaagatgttgaatattttaactgtcagcaggag
cttcttgatgacttgcattctcaataccaaattgtggagagaataattgctcattctaat
caaaaatcggcagctggttatccagactatttctgcaaatggcaaggccttccgtattct
gaatgcagctgggaggacggtgctctaatttcaaggaaatttcagaaatgtattgatgat
tacatgagcagaaatcaatcaaaaaccattcccttcaaagactgtaaggtgttaaaacag
agacccaggtttgttcccatgaagaagcagccctcttacattggtggtgaaggattggag
ctccgggattaccagctggacagtttaaactggatggcacactcatggtgcaagggcaat
agctgtatccttgcagatgaaatgggtcttggaaaaaccatccagactatctccttcctc
aactatctgttccatgaacaccagctctatggacctttcctggtggtggtacccctctct
actcttacttcatggcaaagagaaattcagttatgggctcctctaatgaacgtagcggtt
tacctgggcgacataaacagcagaagcatgattagaacacatgaatggatgcatccacaa
accaaacgtttgaagttgaatatcttgttaacaacgtatgaaattctgcttaaagataag
tcattccttggcaatgtcaactgggcttttattggtgttgatgaagctcatcgtttgaag
aatgacgattcccttctttacaaaactctgatagagttcaagtcaaaccacagacttctg
atcactgggacccctctgcagaactctctgaaggagctctggtcattgctgcattttatc
atgcctgaaaagtttagctcttgggaggtctttgaggaggatcatgggacgggtcgtgat
tctgggtatgctagtctgcataaggagctagagccttttctgctgcgcagagttaaaaag
gatgtggaaaagtctcttcctgcgaaggtagagcagatcctgcgggtggaaatgagtgca
atacagaagcaatactacaagtgggtgctgaccaggaattacaaggcactcagcaaaggc
acaaagggcagtacctcaggctttctgaatataatgatggaactgaaaaagtgctgtaat
cattgctaccttattaaaccacctgacgataatgagttttataacaaacaagaggcctta
cagcatctgattcgtagcagtggaaagctgatcttgcttgacaagctcctcttgcgcctt
aaagagcgaggccaccgagttctcatcttctctcagatggtgcgaatgctggacattctc
gcagaatacttgaagagtcgacagttcctgtttcagaggctggatggatcgataaaggga
gaaatgaggaggcaagcacttgatcattttaatgcagaaggatcagaggatttctgcttc
ttgctgtctacaagagctggtggtctgggcataaatttggcctctgcagatactgttgtc
atttttgactctgattggaatcctcaaaatgacttgcaagcacaagccagggcccatagg
attgggcagaagaaacaggtcaacatctatcgactggtcaccaaggggtctgtggaggaa
gaaatcattgaaagggcaaagaaaaagatggtgctggaccacctggtgatccagagaatg
gataccacaggaaaaactgtactgcacacaggctcagctccttcaagttccactcctttc
aataaagaagagctttcagcaatcctgaagtttggtgctgaggaactgtttaaagaacaa
gaaggagaggagcaggagccacaggaaatggatatcgatgaaatcctgaagcgagctgaa
acacgagaaaatgatcccggtccatctactgtgggggaagaactgctgtcacagtttaag
gtggcaaacttttcaacaatggaggatgaagagattgacctggatgctgatcggaaaaag
aagtcctgggatgatattattcctgaggagcagcggaggagactggaagaggaagagagg
cagaaagagctggaagagatctacttactgcccagaatgagaaattgcgccaaacaggca
aattttaatgggaatgaaggcaggcgcggcaggaacagcaggaacagcaggaacaggagg
tactctgggtccgacagcgattctatttcaggcagaaagcgaccaaagaaacgagggaga
ccacggacaattccaagagaaaacatcaaagggttcagtgatgctgaaatacggaggttc
atcaagagttacaaaaagtttggaggccctctggaaagacttgatgcaattgcccgggac
gctgaactggttgacaaatctgaaatggaccttaaacggctggctgaaaccgtgcataat
ggctgcataaagaccctgagagagaactcatctgggccagaaaagacaggagggggcagg
cgaggtaaagtgaaaggaccgacattccgaatctcaggggttcaagtgaatgcaaagttg
gtcatctcgcatgaagaagaactggcaccattgcacaagtccattccagcagatgctgag
gacaggaaaagatatagcatcccttgtcattcaaaggcagctcactttgatgttgactgg
ggtaaagaagatgactccaacctattgattggtatatacgagtatggctatggtagctgg
gaaatgatcaaaatggacccagacctcaatttaacacaaaagctgttaccagatgaccca
gataagaagccacaggctaaacagctgcagacaagagctgactacctcataaaactacta
agcaaggacctggccaggaaggaggcccagaggttagctgggacggccaattcaagaaag
aggaagcccagaagcaagaagaacaaagttgcaaagccagtaaaagttgaagaggtggtg
aagagtgacttgtctccgcccccatcagagaaaagttcagaggaggaggagacggaagag
cgaaaggaagaggttgctcctgccaagcctgtcaacaggagagccaaagctgaaaaagta
aaaaagtcaagtgatgatgatgatgatggtggtgatgatgacgaaccagagccagaaact
gtaattaaaaatgagcctgaagagaaggaagcaaaagaaaaggacaacaaaaaagaaaaa
aaggataaaaaagaggaaaataaggatgtaaaagagaaaagggaactgaaagagaagaaa
gaaatgaaagctgagcctgtactgaaaaaagaagaaattaaagaggaaaaaataactgaa
gtaaaagttgagatgaaggaaaaactgaagaaggtaacagatgctcctgtgcacattact
gcaagcagtgaacctgtacccatcgccgaggagtcggaggagcttgaccaaaagacgttt
agtgtgtgcaaagaaaggatgcgacctgttaaggcagcattaaaacagttagacagacca
gagaagggtctttcagagagggagcagctggaacacacaaggcagtgcctgatcaaaatt
ggagaccacatcactgaatgtctgaaggagtacaccaacccagaattgatcaaacagtgg
agaaaaaatctctggatatttgtatcaaagtttacagagtttgatgctagaaaactacac
aaactatataaacacgcaatcaagaaacgacaagagaatgctcaggcaggtgacctaaac
agtagcttaaacattcacaacattaaacaggaagatattgaaaagctaaaggagaattct
catcatgatgacaatagcagggaaagctacacctctgagaggcaccactcctcacattac
aatgatcatcacaaagaccggcagggagattcttataggaaaagcgattcttcgaggaag
agaccatattcatcatacagcaatggcaaggaccaccgagacagggatcactacaggcaa
gacagcagatactacagtgacagtaagcacagaaaactggatgaccacagaagtcgagat
cacagatcaggtttagaagggagcatgaaagaaagatctcgctcagaccaccactcccat
tctgaccacaggtcccactccgaacaacgatcaagttctgaatatggccaccacaaatcc
tctcgagaatacaggtaccattcagactggcagatggaccacagggcctctgggagtggg
cctaggtctcccccatatgactccaggtctcccctcggacacagatctccatttgagtac
tcttctgaccacaaaagtactccagagcagatctggagtagccgcaagacataa
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integrated database retrieval system
