Polyodon spathula (Mississippi paddlefish): 121302992
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Entry
121302992 CDS
T07273
Name
(RefSeq) rab11 family-interacting protein 1-like
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121302992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121302992
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
121302992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
Motif
Other DBs
NCBI-GeneID:
121302992
NCBI-ProteinID:
XP_041089314
LinkDB
All DBs
Position
31:complement(2372942..2399938)
Genome browser
AA seq
1536 aa
AA seq
DB search
MSLAEQSQQWYPTNVNVTVLQAHSLKAKGKNGTNDAYAIIQLGKEKFSTSVSEKSLAPVW
REEASFELPLFHQGNQERCTLRIVVMHRALVGLDQFLGEAVINLLELHENKERNKTEWFK
LKSKAGKKEKERGEVHVNIQFMRNNMTASMFDLSMKDKSRSPFGKLKDKIRGKKDRGGFS
DSASAIVPPVSQVLTDSEGEEGGGGKEEKPKKSAKSKIKSIFGKSSNLQRSSLSQSMSVL
PSLQPLPERNAWLSGSRSSGLDVEPSLSPVPEAKVEGKPPLPKPSTHKHSLSADTKQLFS
GKKDPFSLLGGLRSKNDPMSHSSVCINGSHVYTEEPDPEPGLRGSLQNLSGGTNIGSTED
FTSLKSSDQTSTESLKSKTLPSYKVQSTSATQRNQEELQEEEHAARKAEEKRLEEERKRW
QQQQEEEERRLEDEHKRVEERKRQEEENRRRLAAEEEEKKRQEEIRKKEESKTVEKSEST
KVSTLLSMVRGRKDSLKNSDSVSPPETPVDKMTKSVPKKQGSQEFEAVPLRRKPVIPSKE
EQDPDPHLQEKERGAKNPSAPTTGFPSWAASKVTAVKPRLDVSLKDETKDRLPSLSTSCL
SPISATSNHFTSTPCSPSSSLPSPTPFQDSSVPPSREASSGRTPVGSLLMENGKSVPKTD
ASEEGEEPQLSPGSVLDLLSKASSSSISRTPAATSLFEKGRQSAASISACVPEGAGIPAK
PASVFDLLSKAASRTSIASSSGSNSPLVSSVSESPIESINKPASDFDPLLIENFRPPSLF
DCPTVSASISDSAFERMNKSASDLLLKDTSRPPSVSDTPYENINISDSDLLPEANSRQSS
LSDCPTVPASLCNRPFENATKSVSLSKETLSESPFKNTTRPASVSEATSRSRKPSTSETS
SEKQSKADSLASGISFKSDIHECSRSWDPKSPPPELKSDEKPAKLDVKPDPCTSEREKSE
TTGVPEPSEPGSKQFRTEREVPKPTPRAPKSSRTDPWGPAEPTASTPKPAPRTITVEQAR
KEESAAAILAPSPLSNKPGTNSSPVEAEGRSSPSARSPAAVNKPPTSLGAKGSSQGGGVT
GLFVGRLGVPSASPGQDKSLDNSKQARSDRTAKDRDAQKDKQAGGMTKEKSKLPDKSSGE
VFTKDKLAASDERRAVESVTEKDRETLLHQSTREILNQKDEQTVQDKNAGEMQDKQTDQN
ADDRLLALLNKSTGNSLKPKDKQTLSDTSDSETQKLSVLSTKQTPSPPDKNLSGISSQKE
KLAKPDQDTEETVTANTKQPLENKNAELEEDRQTLSEQTSEKDRWTPPASVEDAEGNTSP
LLAVQNKPAVISVRKRAERTEPSSTLRSNLEKQTGEKVVESQRKSKTESLPPLPLPPLLP
SPSSQTVVNSPAQPIGSGGKRLLQAWVSPSETQPITMQQIPGSAQRRPHPVKPMSSQDSQ
TSRMEKDLKSTGVKDAPSGRSGLLASKFTDPTDVAPYSQLTHDELVALVGKQKEALSKKD
CQIRDLEDYIDNLLVRVMEETPNILRNLPSKQAGRI
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgtccttagcagagcagagccagcagtggtaccccaccaacgtgaatgtgacggtgctc
caggcccacagcctgaaggctaaggggaagaacggcaccaacgatgcctacgccatcatc
cagctgggcaaggagaagttctccacctctgtgtctgagaagagcctggccccggtgtgg
agggaggaagccagtttcgagctgcctctgttccaccaggggaaccaggagaggtgcacg
ctgcgcatcgtggtgatgcacagggccctggtggggctggatcagtttctgggggaggct
gttatcaacctgctggagctgcatgagaacaaggagcgcaacaagacagagtggttcaag
ctcaagtcgaaggcgggtaagaaggagaaggaaaggggggaggttcatgtgaacatccag
ttcatgaggaacaacatgactgccagtatgtttgacctctccatgaaggacaagtcacgc
tcccccttcggcaagctgaaggacaagatccggggcaaaaaggaccgggggggcttctct
gactctgcctctgccattgtgccgccggtctcccaggttctgaccgacagcgagggggag
gagggaggcggaggcaaggaagagaaacccaagaagtccgccaaatccaagatcaagtcc
atctttggcaaatcgtcgaacctccagcgctcatccctctcccagtccatgtcggtcctg
ccctccctgcagccgctcccagagaggaatgcgtggctcagcggcagccggtcatctgga
ctggacgttgaaccgtctctgtctccagtaccagaggctaaagtggagggcaagcccccc
ctaccgaagccctcaacccacaagcacagcctgagcgccgacaccaagcagctcttttct
ggcaagaaggatcccttctccctgctggggggtctgcgctccaaaaatgaccccatgtcc
cattccagcgtgtgcatcaatgggagccacgtgtacacggaggagcctgaccctgaaccg
ggcctgagaggctctctgcagaacctgtctggcggcaccaatattgggtccactgaggac
ttcacctccctgaagagcagcgaccaaacctccacagagtccctgaagagcaagaccctg
cccagctacaaagtgcaaagcaccagcgcaacccagaggaatcaggaggagctgcaggag
gaggaacacgctgccaggaaggccgaagagaagaggctagaggaagagaggaagagatgg
cagcagcagcaggaggaagaggagaggagactggaagatgagcacaagagagtggaggag
aggaagagacaggaggaggaaaacagacggaggctggctgcagaggaggaggaaaagaaa
aggcaggaggaaatccgtaagaaagaggagagcaagacagtagagaaatcagagagcacc
aaggtgtccactctgctgtcgatggtcagggggaggaaagactctctgaagaattcggac
agcgtgagtccacccgagacccctgtagacaagatgaccaagtctgtccccaagaaacag
ggttcccaggaattcgaggcggtccccctgaggaggaagcctgttatcccttccaaagag
gagcaagaccccgatccgcacctgcaggagaaggagaggggagcgaagaacccctccgcc
ccgaccacaggcttccctagctgggcagcgagcaaggtcactgcagtcaagcccagattg
gacgtgtctctgaaggatgaaaccaaagacaggcttccttctctttccacctcgtgcctc
tcccccattagcgccacctccaatcacttcactagcaccccttgttcaccctcctctagc
ctcccttcccctaccccctttcaagacagctctgtgcctcccagtcgggaggcgagttcc
ggtcgaactccagtcggctccctcctgatggaaaacgggaaatctgtccccaaaaccgat
gcctccgaggaaggagaggaacctcagctctccccaggctcagtgttggacttgctgtcg
aaggcttcctccagctctatctctcggaccccggcggccacatctctctttgagaagggt
aggcaatcagcagcctcaatctctgcctgtgttccagagggtgctggcatccctgcgaaa
ccagcttctgtttttgacttgctgtctaaggccgcctccaggacatctatagcttcctcc
tctgggtcaaattctccgcttgtatcttctgtgtccgagtctcccattgagagtatcaat
aagccagcctccgattttgacccgctgttaatagaaaacttcaggccaccgtctcttttc
gactgtcccactgtgtcggcctctatttctgactcggcctttgagagaatgaacaaatca
gcctctgacttgctattgaaggacacctcaaggccaccctctgtttccgacactccctat
gagaatatcaacatttctgattcagatttgcttccagaggccaattccaggcaatcttct
ctttctgactgtccaacagtgccggcctccctttgtaaccgaccctttgagaatgccacc
aaatctgtctccctgtcaaaggaaactctttctgaatccccctttaagaacaccaccaga
cctgcctccgtttccgaggcaacctctaggagcagaaaaccctctacttctgaaacctcc
tctgagaagcaatcaaaagcagattcgctggcctccggcatctccttcaaatcagacata
catgaatgcagcagatcctgggacccaaaatccccaccccctgaattgaagagcgatgag
aagcctgcaaaactggacgtcaaaccagacccctgtacatcggagagagagaagtccgaa
accactggcgttcctgaaccttctgagccaggttcaaaacagttcagaacagaaagagag
gtgccaaagcccacgcccagagcccccaaatcatccaggacagacccgtggggccccgca
gagcctacggcctccacaccgaaacctgcgcccagaaccatcacagttgaacaggccagg
aaagaagagtctgctgctgctatccttgctcccagtccactgagcaacaagccaggcact
aactcttcacccgtagaggcagaggggaggagcagccccagtgccaggagcccagcagca
gttaacaagcccccaacttcactgggtgcaaaaggtagttcacagggtgggggagtcact
gggttgtttgtcgggcgtctgggagtcccttctgcaagcccaggacaagacaagagcttg
gacaacagcaaacaggcacgctctgaccggactgcaaaagacagggatgcgcaaaaggat
aagcaggctggtggaatgacaaaggagaagagcaaactgcctgacaagagctctggggag
gtattcacaaaggacaaacttgctgcttcggatgagagaagggctgttgagtctgtcaca
gagaaggacagagagacgctacttcaccagagcacaagggagattttaaaccagaaggat
gaacagactgttcaagacaaaaatgcaggggaaatgcaggacaaacaaactgaccagaac
gcagatgacagacttctagcactgttgaacaaaagcacaggcaacagtttaaaaccgaaa
gacaaacaaacactgtcggacacaagcgacagtgagactcagaaactttctgtattatcc
accaagcagaccccgtcgccccctgacaaaaacttgagcggaatatcctcgcagaaagag
aaactggcaaagcctgaccaagacacggaagaaacggtcacagcaaatacaaaacagcca
ctcgagaacaaaaacgcagaattggaggaggacagacagacattgtctgagcagacctcg
gagaaggacagatggacaccaccagcctcggtggaggatgctgaaggcaacaccagccca
ttactggctgtgcaaaacaagcctgcagttatctctgtgaggaaaagagcggagagaaca
gaaccaagcagcactctgagatctaacttggaaaagcagactggagagaaagtggttgag
tcccagaggaagagtaaaacagagagtctgccccctcttcctcttccccctctactcccc
tctccctcctctcagacggtcgtgaatagccctgcccagcccatcggctcaggagggaag
aggctgctccaggcctgggtttctccctcggagacacagccaatcacaatgcagcaaatt
cctggctcagcacagcgcaggcctcacccagtgaagccgatgagctcccaggacagtcag
acttcccgaatggagaaggatctgaagagcactggggtgaaggatgccccgtccgggcgg
agtggactactcgccagcaagttcactgaccccacggatgtggccccctactcccaacta
acacacgatgagctggtagctctggtggggaagcagaaggaggcactgtccaagaaggac
tgccagatcagagacctggaggactacatagacaacttgctggtccgagtgatggaggag
acacccaacatactgagaaacctgccgtccaagcaggccggccgcatctag
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