Polyodon spathula (Mississippi paddlefish): 121303038
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Entry
121303038 CDS
T07273
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121303038 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121303038 (snrnp200)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121303038 (snrnp200)
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121303038 (snrnp200)
Complex C
U5 SnRNP specific factors
121303038 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
Motif
Other DBs
NCBI-GeneID:
121303038
NCBI-ProteinID:
XP_041089368
LinkDB
All DBs
Position
31:4040368..4080285
Genome browser
AA seq
2107 aa
AA seq
DB search
MGPFKMLGVRNTEPAGRPHSPKQKWRMLQLVACSMSTRRRRKRDEDRYDINKMKGFTLLS
EGIDEMVGIVYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKVRDK
ERRKEVEQLLGPTDDTRYHVLVNLGKKISDYGGDKELQNMDDNIDETYGVNVQFESDEEV
VDEDVHGEVRDEASDEDTEGEEADERCTLTANLGTAGDVMSTKKKDLHPRDIDAFWLQRQ
LSRFYDDAIVSQKRADEVLEILKTASDDRECENQLVLLLGFNTFDFIKILRQHRRMVQYC
TMLASAQSEAEKERIMSKMESDPELSKVLYQLQETEKEDIIREERSRRERVRKSRVDNDL
EAMDMDQQGESLAPRQVLDLEDLAFSQGSHFMANKRCQLPDGSFRKQRKGYEEVHVPALK
PKPFAEDEVLLSIEKLPKYAQAGFEGFKTLNRIQSKLFKAAMDTDENLLVCAPTGAGKTN
VALMCMLREIGKHINLDGTINVDEFKIIYVAPMRSLVQEMVGSFGKRLASYGITVSELTG
DHQLCKEEINATQIIVCTPEKWDIITRKGGERTYTQLVRLIIIDEIHLLHDDRGPVLESL
VARTIRNIEMSQEDVRLVGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVG
ITEKKAIKRFQIMNEIVYEKIMDHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLF
LREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVS
TATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT
SHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEVVLGNVQNAKDAVNWLGYTYLYIRLLR
NPPLYGVSHDEKVVDPLLERRRLDLVHTAALVLDKNNLIKYDKRTGTFQVTDLGRIASHF
YITHDSIQTYNQLLKPTLSEIELFRVFSLSSEFRNITVREEEKLELQKLLERVPIPVKES
IEEPSAKINVLLQAYISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKT
VNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKIEKKNFPFERLYDLNHNEIGELIRMPKMG
KTIHKYVHQFPKLDLSVHLQPITRSTLKVELTITPDFQWDEKVHASSEAFWILVEDVDSE
VILHHEYFLLKAKYAQDEHLVTFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLIL
PEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNAVYNSDDNVFVGAP
TGSGKTICAEFAILRMLLQNAEGRCVYITPMEALAEQVFADWYDKFQETLNKKVVLLTGE
TSTDLKLLGKGDIIISTPEKWDILSRRWKQRKNVQNVSLVLIDETHLIGGDNGPVLEVIC
SRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSTTATFNFHPNVRPVPLELHIQGFN
VSHTQTRLLSMAKPVYHAIMKHSSTKPAIVFVTSRKQTRLTAINILTFCASDVLPQRFLH
CTEKDLAPFLEKLSDATLKETLANGVGYLHEGLNPTERRIVEQLFNSGAVQVVVASRSLC
WGMNISSHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGRANRPLQDDEGRCVIMCQGSKK
DFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKTVENKQDAVDYLTWTFLYRRMTQNPNYY
NLQGMSHRHLSDHLSELVEHTLNDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIEL
FSMSLNAKTKIRGLIEIISNAAEYENIPIRHHEDTLLRQLAQKVPHKLNNPKFNDPHVKT
NLLLQAHLSRMQLSAELQSDTEEILSKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQ
AMWSKDSYLKQLPYFTSEHVKRCTDKGIESIFDIMEMEDEERSGLLQLSDSQIADVARFC
NRYPNIELSYEVAEKENVKSGSPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDP
KSNSLISIKRLTLQQKAKVKLDFVAPALGVHNYTLYFMSDAYMGCDQEYKFSVDVKEADS
EGDSDSD
NT seq
6324 nt
NT seq
+upstream
nt +downstream
nt
atggggccattcaagatgctgggagtcagaaacacggagccggcaggccggccacatagc
cccaaacagaaatggcggatgttacagctcgtagcctgcagtatgagtacaaggcggagg
agaaagagagacgaagacaggtacgacatcaataaaatgaaggggttcacactgctttcg
gagggcattgatgagatggtcgggatagtctacaagccaaagacaaaggagaccagagaa
acgtatgaggtcctgctcagcttcattcaggctgctctaggagaccagccccgtgacatc
ctgtgcggagccgcggacgaggtcctggcagtgctgaagaatgagaaggtgcgtgacaag
gagaggcgcaaggaggtggagcagctgctgggccccacagatgacactcgctaccacgtg
ctggtcaacctgggcaagaagatcagtgactacggaggggacaaggagcttcaaaacatg
gatgacaacattgatgaaacctatggagttaacgtacagtttgaatctgatgaagaggtg
gtggatgaggatgtgcatggagaggtgcgggacgaggcctctgatgaagacacagaggga
gaggaggcagacgagcgctgtaccctcactgccaatttgggtacagctggagatgtgatg
agcacaaagaagaaggacctccaccccagagatatcgatgccttctggcttcaaaggcag
ctcagccgtttctatgacgatgccattgtgtctcagaagagggcagatgaagtgctggag
attttaaagactgccagtgatgacagagagtgtgagaatcagcttgtcctccttctgggc
ttcaacacctttgacttcatcaagatcctccggcagcacaggaggatggtccagtactgt
accatgcttgccagtgcccagagtgaggctgagaaggagagaatcatgagtaaaatggag
tcagacccggagctttccaaggtcctgtaccaactgcaggagactgagaaagaagacatc
attcgggaggagagatcccggagagagagagttcggaagtcccgcgtggataacgacctg
gaggccatggatatggaccagcagggagagtcactagccccccggcaggtgcttgacctg
gaagacctggccttctcgcagggcagccacttcatggcaaacaagcgctgccagctcccc
gacggctccttcaggaagcagcgcaagggctacgaggaggtgcacgtgcccgccctcaaa
cctaaaccctttgcagaggacgaggtactgctttctattgagaagctgcccaagtatgcc
caggcagggttcgaagggtttaagactctgaaccgcatccagagcaagctgttcaaagca
gccatggacactgatgagaacctgctggtctgtgccccaacgggagcgggtaagaccaac
gttgccctgatgtgcatgctgcgggagatcggcaaacacatcaacctggacggcaccatc
aacgtggacgagttcaaaatcatctatgtcgcccccatgaggtccctggtacaggaaatg
gtggggagctttgggaagcgcttggcgagttacgggatcacagtgtcggagttgactggg
gatcaccagctgtgcaaggaggagatcaacgccactcagatcattgtgtgcacccctgag
aaatgggatatcatcaccaggaagggaggggagcgcacctacacccagctagtgcgcctc
atcattatcgatgaaatccaccttcttcatgatgaccgtgggccggtgctggagtctctg
gtggctcgaaccatccgcaacatcgagatgagccaggaggacgtgcggctggtcggcctg
agtgccacgctgcccaactacgaggacgtggccaccttcctccgagtggaccctgccaag
ggactcttctacttcgacaacagtttccgtccagtacccctggagcagacttacgtcggc
atcaccgagaagaaagccatcaaaagattccagatcatgaacgagattgtctatgagaaa
atcatggaccatgctggcaaaaaccaggtgctggtgtttgtccactctcggaaggagact
ggaaagacagctcgagcgatcagggacatgtgtctggagaaggacaccctgggtctcttc
ctccgagagggctctgcctccactgaggtcctgaggactgaggctgagcagtgcaagaac
ctggagctgaaggatctcctgccctacggctttgcgattcatcacgctggcatgacaaga
gtggacaggacgcttgttgaggatctgtttgctgacagacacattcaggtgctggtgtcg
actgccactctggcgtggggtgtcaacttgccagcgcacaccgtcattatcaaagggact
caagtctacagccctgagaaagggcgctggactgagcttggggctttggacattctgcag
atgctgggtcgagctggacgcccccagtatgatacgaagggagaaggtatcttgatcacc
tcccatggtgagctgcagtactacctctccctgctcaaccagcagcttcccattgagagc
cagatggtctccaaactcccggacatgctcaacgcagaggtggtcctgggaaatgtgcag
aacgcaaaggacgcagtgaactggctgggctacacctacctgtacatccgcttgctgcgt
aaccctcccctctatggggtctcccatgatgagaaggttgtggaccccctgctggagcgc
cgccgcctggacctcgttcacactgccgccctcgttctcgacaagaacaacctgatcaag
tacgacaagaggaccgggaccttccaggtgacagacttgggccgtattgccagtcacttc
tacatcacccatgacagtatccagacctacaaccagctactgaagcccacgctcagtgag
attgagctcttcagagtgttctctctctcctctgagttcaggaacatcactgtgagagag
gaggagaaactggagctccaaaagctgctggagagagtccccattcctgtgaaggagagc
attgaggagcccagtgcaaagatcaacgtgctgctccaggcatacatctctcagctgaag
ctggaaggctttgctctcatggctgacatggtttatgtaacgcagtcggcagggcggctg
atgcgagcgatattcgagattgtgctgaaccgcggctgggcccagctcaccgacaagacc
gtcaacctctgcaagatgattgacaagagaatgtggcagtcgatgtccccgttgcgtcag
ttcaggaagcttcctgaagaagtcattaagaagattgagaagaagaacttcccatttgag
cgtctctatgacctgaaccacaatgaaataggagagttgattcgaatgcctaagatgggc
aagacgatccacaagtatgtccaccagttccccaagctggacctatctgtccacctgcag
ccaatcaccaggtccaccctgaaagtggagctgaccatcacacccgacttccagtgggac
gaaaaggtgcatgcctcttcagaggcattctggatcctagtggaggatgtggacagtgaa
gtgatcctgcaccacgaatacttcctgctaaaggccaagtacgctcaggacgagcacctg
gtgaccttcttcgtgccggtctttgagccgcttccaccccagtacttcatccgcgttgtc
tctgaccgctggctgtcctgtgagacccagcttcccgtatcgttccgccacctgatcctg
ccagagaagtacccccctcccactgagctgctggacctgcagcccctgccagtgtctgcc
ctgagaaacagtgccttcgagagcctctaccaggacaagttccctttcttcaaccccata
cagacacaggtgttcaatgcagtgtacaacagcgacgacaatgtgtttgtgggcgccccg
actggcagtgggaagaccatctgtgctgaatttgcaatcctgagaatgttgctgcagaac
gcagaggggcgatgtgtctacatcacccccatggaggccctggcagaacaggtgtttgca
gactggtatgacaagttccaggagaccctgaataagaaggtggtcctgctgactggagag
accagcactgacctcaagctgctggggaagggcgacatcatcatcagcacccctgagaag
tgggacatcctgtcccggcgctggaagcagcgcaagaacgtgcagaacgtcagcctggtc
ctcatcgacgagacgcacctcattgggggggacaatgggcctgttttggaggtgatctgt
tcccgtatgcgttacatttcatcacagattgagcgtccaatcagaatcgtcgctctcagc
tcctctctttccaacgccaaggatgtcgcccattggctgggctgcagcaccacggcaacg
tttaacttccacccgaacgtgaggccggtcccgctggagcttcacatccagggtttcaac
gtgagccacacccagacacgcctgctgtccatggccaagcctgtgtaccacgccatcatg
aagcactcttccaccaaaccagccatcgtgttcgtcacctcgcgcaagcagactcgcctc
acagccatcaacattctcaccttctgtgcctcagatgtcctgccacagaggttcctgcac
tgcacagagaaggacctggctcccttcctggagaagctgagtgatgccaccctgaaggag
acgctggctaatggagtgggctacctgcacgagggcctgaaccccaccgagcgcaggatt
gtggagcagctcttcaactccggtgctgtgcaggtggtggttgcctctcgtagcctgtgc
tgggggatgaacatctcctctcacttggtcatcatcatggacacgcagtactacaatggc
aagattcacgcgtatgtggattacccgatctacgatgtcctgcagatggttggaagggca
aaccggcccctgcaggatgatgaaggccgctgtgtcataatgtgccagggatctaagaag
gatttcttcaagaagttcctgtacgagccgttgccagtggagtctcacctggaccactgt
ttgcacgaccacttcaacgcagagatcgtcaccaaaaccgtggagaacaagcaggacgcc
gtggactacctcacctggaccttcctgtaccggaggatgacccagaacccgaactattac
aacctgcaaggcatgtcgcacagacacttgtcggatcatctatctgagctggtggagcac
acgctgaacgatttggagcagtccaagtgcatcagcattgaggatgagatggacgtggcg
cctctgaacctgggcatgattgcagcgtattactacatcaactacaccaccattgagctg
ttcagcatgtctctgaacgctaagaccaagatccgagggctcatcgaaatcatctccaac
gcggcggagtacgaaaacattcccatccggcaccacgaggacaccctccttcgccagctg
gctcaaaaagtccctcacaagttgaacaatcccaagttcaacgatccccatgtgaagacg
aacctgctcctgcaggctcacctctcccgcatgcagctgagtgctgagctgcagtctgac
actgaagagatcctcagcaaggcagtgcgcctgatccaggcctgtgtggacgtgctctcc
agtaatggctggctgagccccgccctggctgccatggagctggcccagatggtgacccag
gccatgtggtcaaaggactcctacctgaagcagctgccatacttcacctctgagcacgtc
aagcgctgcactgataagggaatcgagagcatctttgacatcatggagatggaggatgag
gagcgcagtgggctgctgcagctctccgacagtcagatagcagacgtggctcgcttctgt
aaccgctaccccaacatcgagctctcctacgaggtggctgagaaggagaatgttaagagt
gggagtcctgttgtggttttggtgcagctagagagagaagaggaagtgactggacctgtc
attgcaccactcttccctcagaaacgtgaggaaggctggtgggtggtgattggagacccc
aagtccaacagtctgatctccattaagagactgactctgcagcagaaagctaaggtgaaa
ctggactttgttgccccagccctgggtgtccacaactacacactgtacttcatgagcgat
gcctacatgggctgtgaccaggaatacaagttcagtgtggacgtgaaggaggctgacagt
gagggagacagcgactctgactga
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integrated database retrieval system
