Polyodon spathula (Mississippi paddlefish): 121303141
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Entry
121303141 CDS
T07273
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121303141 (ddx56)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121303141 (ddx56)
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Helicases
121303141 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
121303141
NCBI-ProteinID:
XP_041089567
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All DBs
Position
31:complement(3822032..3838590)
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AA seq
473 aa
AA seq
DB search
MDGGRLQFHEMGLDDRLLKALADLGWAQPTLIQEKAIPLALDGKDLLARARTGSGKTAAY
ALPIIQHILSVKQAVTEQAVRALILVPSKELGQQVQKMIRELTAFCARDVRVVDISGQAE
LSAQRPILMEKPDIVVGTPSRVLAQLSAQNLLLRSSLEMLVIDEADLVFSFGFESDLKSL
LCHLPKIYQAFLMSATFNEDVQSLKKLVLHNPVTLKLQGSQLPGSSQLTQYHIRCEEEDK
FLLIYTLLKLALVRGKTLIFIETIDRCYRLKLFLEQFSIPACVLNSELPVHSRCHIIGQF
NQGFYDYIIATDEQSLGDPPALPGGQGKKGKKKKAQGSSGKDKEYSVSRGIDFQNVANVI
NFDFPPTVESYIHRVGRTARADNRGTALTFVLHTQLPMLAEIEDALTAENADCALKPYEF
KMQEIEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKLKIRNDPRGCFP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggatggtggcaggttacagtttcatgaaatggggctggatgatcgccttttaaaggcg
ctggctgacctgggctgggcacagcctaccctgatccaggagaaggccatcccgctggca
ctggatgggaaggacctcctggctcgagccagaaccggttctggcaaaaccgctgcttac
gccttgccaatcatccagcacatcctgtctgtcaagcaggcggtgacggagcaggcagtc
cgagccctcatcctggtccccagtaaggagctgggacagcaggtacagaagatgattcgt
gagctgactgccttctgtgccagggacgtgcgtgtggttgacatctccggccaggcggag
ctctccgcacagaggcccatcctgatggagaagcccgatatcgtggtgggcactccctcc
cgtgttctggctcagctgagtgctcagaatctgcttctacgcagctccctggagatgctg
gtcatcgacgaggctgacctggtcttctctttcggcttcgagagcgacctcaagagcctc
ctctgccacctgcccaaaatctaccaggctttcctgatgtctgccacgtttaacgaagat
gtccagtccctgaagaagctggttctgcacaacccggtgactctgaagctgcagggctcc
cagctgccaggcagctcccagctcacacagtaccacatccgctgtgaggaggaggacaag
ttcctgctcatctacaccctgctgaagctggccttggtccggggcaagaccctcatcttc
atcgagaccattgaccgctgctaccgcctcaagctcttcctggagcagttcagcatccct
gcctgcgtgctcaactcagagctccctgtgcactccaggtgccacatcatcgggcagttt
aaccaggggttctacgattacatcattgccacggatgagcagagtctaggggacccccct
gccctgcccgggggccagggcaagaagggcaagaagaagaaagcccagggcagcagcggg
aaagacaaagagtacagtgtctcgcgagggatcgatttccagaacgtggctaatgttatt
aacttcgacttccccccgacggtagagtcgtacatccaccgtgtcggcaggacagcccgt
gcggataaccgaggaacagccctgaccttcgtattgcacacacagctccccatgctggct
gaaatagaagatgccctcactgcagagaatgcagactgtgccctgaaaccctacgagttt
aagatgcaggagattgaggggttcaggtacaggtgtcgggatgccatgcgctccgtcacc
aagcaggctgtgaaggaggcccgtctgaaggagatcaaacaggagctgctcaactctgag
aagctcaaaatcagaaatgaccccaggggatgcttcccctaa
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