Polyodon spathula (Mississippi paddlefish): 121303186
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Entry
121303186 CDS
T07273
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2-like
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121303186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121303186
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
121303186
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
121303186
NCBI-ProteinID:
XP_041089646
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Position
31:4252142..4261715
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AA seq
499 aa
AA seq
DB search
MSMKRERDPELEEEDEDEVPAKAVRCKEVSEDCRSRHCPYLDTINRSILDFDFEKLCSIS
LSHINVYACLICGKYFQGRGLKSHAYTHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLE
DITYVLKPTFTKKHIANLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQALSNVP
PLRNYFLEEENYRTIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCS
KKNFQITKQGDAVDFLSWFVNALHGALGGTKKKPSIITKVFQGSMRIFSKKLPHPDLPAE
EKEALLLNEEYQEKMSESTFLYLTLDLPTAPLYKDEKEQLIIPQVPLFSILGKFNGSTEK
EYKTYKENFLKRFQLTQLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLTEEA
QVTEKNTTYDLVANVVHDGKPSEGAYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAY
IQIWKRREEDDDEINQHGA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgaagagggagagagaccctgaactggaggaggaggacgaagatgaggttcca
gcgaaggcggtgagatgcaaggaagttagtgaagactgtcgaagccgacactgcccctac
ctggacaccattaacaggagtatcctggatttcgattttgagaagctgtgctccatttca
ctctcccatatcaacgtctacgcctgtctcatctgtgggaaatatttccaaggtcgtggt
ttgaagtctcatgcctacacacacagcgttcagttcagccatcatgttttccttaacctg
cacacccttaagttttactgcctgccggacaattatgagatcatcgactcctccttggag
gacatcacatatgtactgaagcctacctttacaaagaagcacatcgctaacctggacaag
caaggcaaactgtaccgtgcttacgatggtaccacctacctgccaggcatcgtgggattg
aacaacatcaaggcgaatgactatgccaacgtagtgctgcaggcattgtcaaacgtaccc
ccgctgcgtaactatttcttggaggaggagaactaccggaccatcaagcggccgcctgga
gacataatgttcctgctggtgcagcgctttggggagctcatgaggaagctgtggaacccg
cgcaacttcaaggctcacgtctcgccccacgagatgctgcaggctgtcgtcctgtgcagc
aagaagaacttccagatcaccaaacagggtgatgctgtggactttctctcctggtttgtg
aatgccttgcatggggctctcgggggaacaaagaaaaagccctcaataattacaaaggtg
tttcagggttccatgcgcattttctccaagaagctccctcaccctgatctgcctgcagag
gagaaagaggcgctgctgctgaacgaggaataccaagagaagatgtccgagtcgaccttc
ctgtacctgaccctcgacctacccactgcccctctctacaaggatgagaaggagcagctt
attattccacaggtccccctcttcagcatcctcggcaagttcaacggcagcactgagaag
gagtacaaaacctacaaggaaaacttcctgaagaggtttcagctgacccagctgcctccc
tacctcatcttctgcatcaagagattcacaaaaaacaacttctttgttgagaagaacccc
accattgtcaacttccctatcacaaacgttgacctgcgggagtaccttactgaggaagct
caggtgacagaaaagaacacaacatatgaccttgtggctaacgtcgtgcatgatgggaaa
ccatcagagggggcttatagaatccatgtgctgcaccatgggacagggaaatggtatgaa
ctccaggatcttcaggtgactgacatcctgccccagatgattacgctctcagaggcttat
attcagatctggaagagacgagaggaggatgatgatgagattaatcagcatggtgcgtga
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