Polyodon spathula (Mississippi paddlefish): 121303327
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Entry
121303327 CDS
T07273
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121303327
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Meiosis-specific proteins
Others
121303327
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
121303327
NCBI-ProteinID:
XP_041089861
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All DBs
Position
2:complement(89300480..89336661)
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AA seq
1340 aa
AA seq
DB search
MPTLFSLLGRLRTFSVKDPLLNSRGELFTDEIFFRHSMTFDSAMTGAIVEQGADLRSENY
SKMSALNEESLMLPFYLESHSHNEKSGTPTAWELRDLLRIAPESMLEGDTTWKEAFQRVV
ISGVTQAVEISEYCPSCSEISDESYRERTKNILDHTNPVSSRLYTHMEADPPFTPPHQPL
QTRDRLSCKEFSPEQLSPIYVNRVFSDAGKEIMESRVWHGEKHHAALLGLLLAEPQVQKS
SLQCHSATEVFRMVGVETDSSANLTVERVVYKYLNPDQPSLLESLDIGAPELPPAKAETF
STLTVIQVDNILRQSSMDTEYHRQSATPPENKVKSIPKDLKNKNETLTNVQNNVQKAQHT
AADIPASKTAQRSDTVPAVRFAKTKQVLEGIGGLPVQPKNGCLIIGRSEKEIKDPCNKGT
EWRPQQEDLDPLANFIMLRSKLTNAVAAPPKAKSKNESQTTADTKVEDRFACATPKEQSS
AARPVTPEKTKTETRNTVVIEVQASESQCRAYCLLQDIASPVLISSKELGISAAALGDFA
TLAFDQTRFFLKQQEKVVSNSLKQGKPSEKDVMLYKHAAVVHLLVTVRDLLLMCDLNTAV
DYLARAKEMYVSTLGSCLDDIWKRLRVVQYISQKNEEANPKIAELQRKMLAWIQRNHSWE
QSHKVLVIIRMDSDCVRAILVNSLNHVKGLKTAAVFPEETTKLNSKNVITCLQRYSCVVA
CSKHIHAAFPWQHFSLVVEYDYMEHCGWTQLCMNNNISHMAFKTTIPKTISSNTSQQAPC
ENESNLLLELLIPFVFLTTEGLLNNPELLQTLESRCNITVLVRNYSESLQIFGGTHRYAV
ITVDECTAVIIQEIEELAMEKASDNIILRLVALSLQYRCCWIIFHSAEGQNSEYHFTGEV
FNNLVLIYTALVLFGVKSEDLEIKVVIASGTEETANLLCQIASKTLMNSKRDPLTWLDRS
WLSDVPSQAENCLLTFPCVNPLVAQLMLKKASSLEWLLAATFSELQELLPEVPQKVIKLF
SDTTALYKLNVSHSPPESLAEETSSDNFLHSGHNTGGHDDFQPRLDFLEGNSEQCQVHNL
FKRQPFQGPFSGTEDTECRSQMHQQRGRLYIDKASFITQPVAAASVRDQWVLGGDYEPIE
NYSVDLWPLKEESCDEQFASTRPSGSHTVRTSSGPAQAEVSALYYSKSAGQRNAESYFER
RPQHSQVYSAQQTAISSLLMKEPSFPSGYASSESSSMPLYVPNQPADSLCLDSRTFAHAT
RSIADSVFACQKSEYRSDVSRHPDFTRAFQSVSERKRVARSSEGDNTSERFSLLPQLKRR
RLTYEKVPGRSDGQTRLTFF
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgctgttttcccttcttggcagactgaggactttctctgtcaaagatccactt
ctgaattcaagaggagaactatttacagatgagatctttttcagacatagtatgacattt
gacagtgcaatgactggggctatagtggaacaaggagcagacctgaggagtgagaattac
agtaaaatgtcagcactaaatgaagagtctttgatgttgccattttatttggaatcccac
tcccacaatgaaaagagcggcactcccactgcctgggaactcagagatttgttgcgaatt
gcacccgagtcgatgttggaaggagataccacatggaaagaggcatttcagagagttgtg
atttctggtgtcacacaagcagtggagatttccgaatattgtccctcttgcagtgagatt
tcagatgagagttacagagaaaggacaaagaacatacttgatcatacaaatccagttagt
tccaggttgtacacccatatggaagcagaccctcctttcacacctcctcaccagcccctg
cagactagagaccgtttatcatgcaaggagttcagccctgaacagctgtccccaatttat
gtaaatcgagtgttttctgatgctggtaaagaaatcatggagagtagagtctggcatgga
gagaaacaccacgctgctctcctgggtctgctgcttgcagaacctcaagttcagaagtcc
agtttgcagtgccattctgctacagaagtcttccggatggtgggtgttgagacagattct
tcagcaaatctaacagtagaaagagttgtctacaaatacttaaacccagatcagccaagc
ctcttggagtcactggacataggggcaccagaactgcccccagctaaagcagaaacattt
tctactctcaccgtgattcaagtagacaatattttgagacagtccagcatggacacagaa
taccatagacagagtgccacacctcctgaaaataaagtcaaatccattcctaaagactta
aaaaataaaaatgagacactgaccaacgttcaaaataatgttcagaaagcacaacataca
gctgctgacatccctgcaagtaagacagctcagaggtcagacacagtaccagcagtgaga
tttgcaaaaaccaaacaagtgctggaaggaatagggggtcttccagtgcagcctaaaaat
ggctgtctcattattggcaggtctgaaaaagagataaaagacccctgtaacaagggcaca
gaatggagaccacagcaggaagatttggatccgctcgccaacttcataatgctgagatcc
aagctgacaaatgcagttgctgctccccccaaagccaaaagcaagaatgagagtcaaacc
acggctgatacaaaggtagaagataggtttgcctgtgcaacccccaaagaacaaagctct
gctgccaggcctgtaacaccagagaaaaccaagacagaaacgaggaacactgttgtgatt
gaggtccaagcatcagagagccagtgcagagcctactgtctacttcaagatattgcatcc
cctgttctcattagttcaaaagaactgggcatatctgctgctgccttgggggactttgct
actctggcttttgaccaaacccggttctttttgaaacagcaggaaaaagtagtcagcaac
agcctaaaacaaggtaaaccaagtgaaaaagacgtaatgctgtataagcacgccgctgtg
gtgcatcttttggtgacagttcgagacctgttgcttatgtgtgaccttaacacagctgta
gactatctggcaagagccaaagaaatgtatgtcagcacactggggtcttgtttggatgac
atctggaaaagactgagggttgtgcagtacatcagccagaagaatgaggaagccaaccct
aaaatagcagagctccagcggaagatgttggcatggatacaaagaaaccattcttgggag
cagagtcacaaagtgctggtaataatacgaatggattcagactgtgtaagggctattctt
gttaacagtctcaatcatgtgaaaggtctgaaaaccgctgcagtgtttcctgaagaaact
accaaactgaattccaaaaatgtgataacatgcctccagaggtattcgtgtgtggtggcc
tgcagtaagcacatccatgcagctttcccctggcagcatttctcattggtagtggaatat
gactacatggagcactgtggctggactcagctttgcatgaacaataatatcagccacatg
gcatttaaaactaccattcctaagaccatcagttcaaacacaagccagcaagcaccctgt
gaaaatgaatcaaacctgttattggagcttctgattccctttgtgtttctgacaactgaa
ggcctgttgaacaacccggagcttctacagactctagagtctagatgcaatattactgtt
ttggtgagaaactacagtgaatctctacagatatttggaggaactcatcgctatgcagtg
attacagtagatgaatgcactgcagtaatcattcaggaaattgaggagctggcaatggag
aaagcctctgataacataatcttgagactggtggccttatctctgcagtacagatgctgt
tggatcatttttcattctgcagagggtcagaactcagagtatcattttacaggggaggtc
ttcaataatctggtgttgatctacactgcccttgtgctgtttggggtaaagtctgaggac
ctagaaatcaaggtagtgattgcatcaggaactgaggaaacggctaatctgttatgtcag
atagctagcaagacattgatgaactccaagagagaccccttaacctggctggataggtct
tggctttctgatgtaccatcacaggctgagaactgcttgctcaccttcccctgcgtgaac
cctttggtggctcagctcatgttgaagaaggcctcatcgctggagtggcttctagcagca
acgttcagtgagctgcaggaactcctccctgaggttccacagaaagtcatcaagctcttc
agtgacaccacagctctgtacaaactgaatgtgtcacattcaccacctgaatcgctagcg
gaggagacatctagtgacaacttcctccattctggtcataacactggcggtcatgacgat
ttccaacccaggcttgatttcttagaaggcaactctgagcaatgccaagtgcacaaccta
tttaagaggcagccttttcaggggccttttagtgggactgaagacacagaatgcaggtcc
caaatgcatcagcagagaggtagattatatatagacaaggcttcattcataacacaacca
gtcgctgctgcctcagtccgtgatcagtgggtgctaggtggggattatgaaccaatagaa
aattattctgttgatctttggccactaaaggaggaatcgtgtgacgagcagtttgcaagc
acaaggccaagtgggagccatacagtacggacttcgagtggaccggcacaggctgaggtc
tctgccctgtactacagcaaatcagccggacaaagaaatgcagagagctactttgagagg
aggccccaacattcccaggtttactctgcccaacagacagccatttcctccctgttaatg
aaagagccttcctttccaagtggttacgctagttctgaatccagcagcatgccattgtat
gtgccaaaccagccagcagatagtctgtgtcttgacagccgtacatttgctcatgctact
agatcaatagccgactctgtgtttgcttgccagaaatctgaatataggagtgatgtcagc
aggcacccagacttcaccagggcattccaaagtgtctcggagaggaagagagtggcaagg
agttctgagggagacaacacttcagaacgatttagccttttaccacaactcaaacgaaga
aggctgacctacgaaaaagtaccgggaaggagtgatgggcagacaagacttacattcttt
taa
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