Polyodon spathula (Mississippi paddlefish): 121303373
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Entry
121303373 CDS
T07273
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121303373 (prdm1b)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
121303373 (prdm1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
zf-C2H2_6
zf-C2H2_15
zf-C2H2_jaz
DUF7445
zf-met
STL11_N
zf-C2HE
B129_C2H2-zf
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
121303373
NCBI-ProteinID:
XP_041089966
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Position
32:complement(5340872..5362806)
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AA seq
771 aa
AA seq
DB search
MRMKGEIANMSEWREAEFAQNCTYIVNDQPCDQLKSDSSPRAMTSIPRNLRFKYNQASEV
TGVFSREYIPQGTRFGPLLGHHYTRDSIPKHANRKYFWRIYSPGGKFHHFVDGYDVHESN
WMRYVNPACSLSDQNLVACQNGKDIYFYTVQPIPVNRELLVWYSRDFSERLHYSPHGDLL
HPKLKHSTKEFKDSEANRQQLPHKDAFYETDQKFKAKKTKREEDKEEEEKIDVEMLERDT
PPVTPDNQIVDFSKKIHSETDPQTKLQPSADFPEKRPVSLMRETSSDRASPCHATSPNQR
VKSPTDEHSELSCCSSAINTTTTPHKDLTLNLHGLYSSEEGLVSYPIYSPPRHLQQPYLY
PYGHHPSHYHHLLLPQYSPPFPGIGPNMNGLGIFPRVPPMYNSYLGAHGLPYPLVSQQKV
MGLPAGLQEGGPHHCLRLPEQPRDGIIPAPTSAFSLKSPEGGLKERLPNHSPPSGAPATP
EHSPQPKLTSQSPGHSNEAINLSKPKTSQGPSSSPGYKSLPYPLKKQNGKIKYECNQCLK
TFGQLSNLKVHLRVHSGERPFQCLVCRKSFTQLAHLQKHNLVHTGEKPHECQVCHKRFSS
TSNLKTHLRLHSGEKPYQCKLCSTKFTQYVHLKLHKRLHARDRPYKCLLCSQSYIHQISL
QIHSRGYCPSAAMLDQSHEELCRMNEMIRKFDVSSDADTMEEKASMAEVDTVEKCMLKSR
ELKEGKEDQLQTGFFHHHHHTPSPVSHERSPATAGNIFRPHSHITMKQEVP
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgaagggggagatcgcgaacatgagcgaatggcgggaggcagagtttgcacag
aactgcacatacatcgtcaacgaccagccatgtgaccagctcaagagcgacagctccccc
cgcgctatgacctccataccgcgcaacttgcgcttcaagtacaaccaagccagtgaagtg
actggggtcttcagcagggagtacatccctcaaggcactcgcttcggacctctgctagga
caccattacaccagagacagcattcccaagcacgccaacaggaagtacttctggagaatt
tactcccccggagggaagtttcaccatttcgttgatggctatgatgtgcacgagagcaac
tggatgcgctacgtgaacccagcttgttccctcagtgaccaaaacctagtggcctgccag
aatggcaaagatatctacttctacaccgtccagcccatcccagtcaaccgcgagcttctc
gtctggtacagcagagacttctcagagcgcctgcactactccccacatggggacctgctc
catcccaaactgaagcactcgaccaaggaattcaaggattctgaagctaacaggcagcag
ctacctcacaaagatgcattctacgaaacagaccaaaaattcaaagctaagaagacaaaa
agagaagaggacaaagaagaggaggaaaagattgacgtggaaatgctggaaagggacaca
cctcctgtaacccccgacaaccagattgtggatttcagcaaaaagattcactcagaaaca
gaccctcaaaccaaactccagccttcagcagacttcccagagaagaggccagtctccctt
atgagagaaacatctagtgacagggccagtccttgccatgccaccagtccaaaccaaaga
gtgaaaagcccaactgacgaacactcagaactgagctgctgttcttcggctataaatacg
acaaccaccccccacaaggatctgaccttaaacctccacggtctttacagcagcgaggag
ggcttggtctcctatcccatttactccccaccaaggcacctccagcagccctatctctac
ccttacggacaccacccctcacattatcaccacctcctgctacctcagtactctccccca
ttcccaggcatagggcccaacatgaatggcctgggcatcttccctagggtaccccccatg
tacaacagctacctgggggcccatggtctgccttaccccttggtctcccagcagaaggtc
atggggctcccagcgggtcttcaggagggcggcccccaccactgcctgcgtctcccggag
cagcccagagacgggatcattccagcccccaccagcgctttctcactcaagtctccagag
ggcgggctgaaggagagacttcccaaccactcccctcccagcggagcccccgcaacacca
gagcactctccccagccgaagcttacctcacaatccccaggtcacagcaacgaggccatc
aacctcagcaagccaaagaccagccagggcccctccagcagccctgggtacaagtccctc
ccttaccccctcaagaagcagaatggcaagatcaagtatgagtgcaaccagtgcctgaag
acctttggacagctctccaatcttaaggtgcacttgcgggtccacagcggagaacgtcca
ttccagtgtctcgtgtgcagaaagagcttcactcagctggctcacctgcagaaacacaac
ctggtgcacacaggggagaaaccccacgagtgtcaggtttgccacaagcgcttcagcagc
accagtaacctcaaaacccacctcagactgcactcaggtgaaaaaccctatcagtgcaag
ctgtgctccaccaagttcacccagtacgtccatctcaagctgcacaagcgcctgcacgcc
cgcgacaggccttacaagtgcctcctctgctcccagtcctacatccaccagatcagtctg
cagatccacagcagaggatactgcccctcggctgccatgctggaccagtcgcacgaggag
ctctgccggatgaacgagatgatcaggaagtttgatgtgagctccgatgctgataccatg
gaagagaaagccagcatggctgaggttgacacggtggagaaatgtatgttgaagagtcga
gagttgaaggaaggcaaggaggatcagcttcagactggcttcttccaccaccaccaccac
acaccatccccagtttcccatgaaagaagcccagccactgctgggaacatattcagacca
cactcacacatcaccatgaagcaagaagttccataa
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