Polyodon spathula (Mississippi paddlefish): 121303479
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Entry
121303479 CDS
T07273
Name
(RefSeq) UV excision repair protein RAD23 homolog B-like
KO
K10839
UV excision repair protein RAD23
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03420
Nucleotide excision repair
pspa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121303479
09124 Replication and repair
03420 Nucleotide excision repair
121303479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pspa03051
]
121303479
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121303479
Proteasome [BR:
pspa03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
121303479
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121303479
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
UBA_Ucp12
Crinkler
Rad60-SLD_2
UBA_3
CUE
DUF1421
Dsc3_N
Ubiquitin_5
UBA2_UBAP-1
UBA_2
UBA_9
Motif
Other DBs
NCBI-GeneID:
121303479
NCBI-ProteinID:
XP_041090143
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Position
2:complement(90594248..90608753)
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AA seq
388 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDGEETVKALKEKIETEKGKDGFPVAGQKLIYAGKILNDDTALK
EYKIDEKNFVVVMVTKPKAAPTAAQPATSTTPSSTTSSTSAPAPTPVTPAAPAASDTAPA
SAAKEEKPTETGDNKPATTAAPATSPLGTSSLSANVNIFEEATSALVTGQSYENMVSEIM
SMGYEREQVVAALRASFNNPDRAVEYLLTGIPVERESHSIADPVVPQAGSTPPAATTGPS
LTPTSGLTQPAASATIPGANPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLL
QQISSHQEQFIQMLNEPAQEAAGQGGGLAEAGGGPMNYIQVTPQEKEAIERLKALGFPEG
LVIQAYFACEKNENLAANFLLQQNFDDD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcacactgaaaaccctgcagcagcaaaccttcaaaattgatatcgacggagag
gaaacggtaaaggcactaaaggaaaaaattgaaacagaaaagggaaaagatggttttcca
gtagctggacaaaaactgatatatgcaggtaaaatcctgaatgatgacacggctctcaaa
gagtataaaatagacgaaaagaactttgtggtggtcatggtgacaaagcctaaagcagcc
cctacagctgcccagcctgccacaagcaccacaccttccagcactacatcctcaacctct
gctccagcaccaaccccagtgacaccggcagctcctgctgcatctgacactgcacctgcc
agtgctgcaaaagaggagaaacccaccgagacgggagataacaaacccgctacaactgca
gcgcctgcaacatctcctcttggtacatcgagtctgtctgcaaatgtaaacatttttgaa
gaggctacttctgcacttgtgactggacagtcgtatgaaaacatggtgtcagagatcatg
tcgatgggatatgaaagagagcaggttgttgcagcactgagagccagctttaacaatcct
gacagagcagttgaatacctcttaacgggtattccagtggagagagagagtcattcgatt
gctgatcctgtcgtgccgcaagcaggcagtacccctcctgctgctactacagggccatca
ctgactcctacttcaggtttgacacaacctgctgcatcagccacaatccctggagccaac
ccccttgagttcttgaggaatcagcctcagttccagcagatgcgacagattattcaacag
aacccatccctgctaccagccttattgcagcagataggaagagagaacccacagttgctg
cagcaaatcagcagtcaccaggagcagtttattcagatgcttaatgagccagcacaggaa
gcagctggccaaggaggagggctggcagaagctggaggtggaccgatgaactacattcaa
gtaacgcctcaggaaaaagaagctattgaacggctaaaagcattaggattccctgaagga
cttgttattcaggcttacttcgcttgtgagaagaatgaaaatttggcagcaaactttctt
ctacagcagaactttgatgacgactaa
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