KEGG   Polyodon spathula (Mississippi paddlefish): 121303538
Entry
121303538         CDS       T07273                                 
Name
(RefSeq) roquin-2-like isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pspa03000]
    121303538
   04121 Ubiquitin system [BR:pspa04121]
    121303538
Transcription factors [BR:pspa03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    121303538
Ubiquitin system [BR:pspa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121303538
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-CCCH zf-RING_UBOX zf-RING_2 zf-CCCH_4 Prok-RING_4 zf-C3HC4_4 zf_CCCH_4 zf-C3HC4 Zn_finger_prot zf-CCCH_UNK zf-C3HC4_2 zf-CCCH_2 zf-RING_10 DUF2203
Other DBs
NCBI-GeneID: 121303538
NCBI-ProteinID: XP_041090227
LinkDB
Position
33:148266..192156
AA seq 1172 aa
MPVQAAQWTEFLSCPICYSEFDESKHKPISLGCSHTVCKTCLNKLQRKACPFDQTVLNTD
IDALPVNFALLQLVGAQVPDQQTVHLSNVAESKHYEAAKKCVEELALFLKPLSGGKGVAS
LSQSALSRPMQRKLVTLVTCQLVEEEGRLRALRAARSLGERTVTELILQHQSPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLSPHLELLANI
DHNPDAAPSTWEQLEDVMVAVKTVVHGLVDFIQNFSKKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGANCTFAHAQEELEKYRMRNKKISASVRRFPVSQVLLGNVGVNSTTATTVSGS
TESMGEMIHSTNGVHRESSEPQLIPRGADSPLDELKKLARGGSSGLTAPCCLAESPPESK
MLSPCKTPVNPGTATSTVPPSREASMNSVHSNPGQFVSRVSLCPRQQSDVYYLNPQTAVS
YDAPPSQTKNYYAPPPPPPSVSVSTRFVRSSNVPESSLSPPSVPYTDQYPSFPPQGRMTS
SPCPPPPPQQYSYPAVHSGMYAPVYDSRRMWRPQMYHRDDVRSSSLPPMDVVHSSIYQPP
LRERYSSLDGYYSVAGQAASEQRAVPLQRDSCNRMAVGYDELFRRKPDQWTQCHSQKPPL
VSPALPLTAQSPSPSSPHFNVDFSTEFSSDFVGSKYKEDDRLSHYSPWSCGTIGTCIHAV
DSEPKDVVANSSMELTDHNSSDIKRRTHLFEPQRRLRDEDPIIPFGEGPIISKWGAISRS
SRTGYHTTDPIQATASQGSTTKPINFRDYGPYINHSDSRWSAYESDSSAPSNYMKRDQLR
VSGLTAKDSCNRDHLSTELQQAASNSLLLQKEANALATQQKWASLEDELSFSLIGSKIAL
RNTETGFTEDSVDSKPDRDIELELSALDADEPDAQDEEIEEALSHQLCINSHNDKRSNGT
VAGNGHQPIQQDSITSDKVGNHILKQTAINKKQRVIQPMTWCFSKAMTPAGGVSSSASVT
SALSISKLVLKTATQGDLTKPATNGEMLLNGS
NT seq 3519 nt   +upstreamnt  +downstreamnt
atgcctgtgcaggcggcacaatggacagagtttttatcttgtccaatctgctacagtgag
tttgacgagagcaagcacaagccgatcagtctggggtgttcacacacagtctgcaagacc
tgcctcaacaaactgcaacgcaaggcatgtccctttgaccagactgtcctcaacacagac
atcgacgcccttcctgtcaactttgcactgctccagctagtgggtgcccaggtaccagat
cagcagacggtacatttaagtaatgtggcagaaagtaaacattatgaggctgcaaagaag
tgtgttgaggaactggcgctcttcttgaagcctctaagtggaggaaagggagttgcgagc
ctgagtcagagcgcgctgagtcggccgatgcagaggaagctggtgacgctggtgacctgt
cagctggtggaggaggagggccgattgcgagcgctgagagccgcaaggtcgctgggggag
aggactgtcaccgagctcatcctgcagcaccagagccctcagcagctctctgcaaacctg
tgggccgctgtcagggctcggggctgccagttcctggggccagctatgcaggaagatgct
ctgaagctggttctccttgcattggaagatggctcggccctttccaggaaagtgttggtc
ctctttgttgttcagaagctggaggctcgattccctcaggcatccaaaaccagcatcggc
cacgtcgtgcagcttctctaccgtgcttcctgctttaaggtcaccaaaagggatgaagac
tcttctttgatgcagctaaaagaggagtttcggacttatgaggctttgcgcagggagcac
gatgcacagatagttcacattgccatggaagctgggcttcgcatctctcctgaacagtgg
tcttcccttctgtatggtgatctggcacacaagtcacatatgcagtctattattgataaa
ctccagtcaccagaatcttttgcaaagagtgttcaggaactgacaatagtcctgcagcgg
acaggagatccagctaacttaaaccgactaagccctcacctggaacttttagctaacatt
gaccataacccagatgctgcaccctcaacttgggaacagctggaagatgtcatggtggct
gtgaagacagtcgttcatggacttgtggatttcatccagaacttcagcaaaaaaggtcat
gaaacaccccagccacaaccaaacagcaaatacaaaaccagtatgtgtcgagacctgagg
cagcaaggaggctgtccacgtggagccaactgtacgtttgcccacgcccaggaggagctg
gagaaataccgaatgaggaataaaaagatcagtgcgtctgtcaggcgctttcctgtgtct
caggttctccttggtaatgttggagtgaacagcaccacagcaactactgtgtctggaagt
acagaaagcatgggggaaatgatccacagtaccaatggggttcacagagaaagcagcgag
cctcagcttattccacgaggggctgactctccactcgacgagctgaagaaacttgccagg
ggtggctccagcggcctgactgctccctgctgtcttgcagaatcccctcctgaaagtaag
atgctctcaccttgtaagactcctgtaaaccctggcacagctacctcaactgttcctccc
tctcgtgaagccagtatgaattcagtacattctaaccctggccagtttgtgtcccgggta
tctttgtgcccccgtcagcaatctgatgtgtattacctcaacccgcagacagcggtgtcc
tacgatgcaccaccatcccaaacaaagaactactatgctcctccacctcctccccctagt
gtttcagtttctacgcgttttgtccgttccagcaatgttcctgaatcatctctctctccc
ccatcagtgccctacacagaccagtacccatcgtttccaccgcaggggagaatgacgtct
tctccctgccccccgcctccccctcagcagtacagctaccctgcagtgcactctgggatg
tacgctcccgtgtacgacagccggcgcatgtggaggcctcagatgtaccaccgcgacgac
gttcgaagcagttctttaccccccatggatgtggtgcactcgtcaatctaccagcctcct
ctcagagagagatacagctctctcgatggatactactctgtggctggccaggcagcaagt
gagcagagagccgtgcctttgcaaagggactcatgcaaccgaatggctgttggttacgat
gagctgttcaggaggaaaccagaccagtggacccagtgccacagtcagaagcctccactt
gtctctccagccctccctctcaccgcacagtccccctcaccttcctccccgcacttcaat
gtggacttcagcactgagttttctagtgactttgtgggctctaaatataaggaggatgac
cgtctgtcccactattctccctggtcctgtggcactatcggcacatgcattcatgctgtc
gattccgaaccaaaagatgttgtggccaattccagtatggaattaacagatcacaacagc
agcgacatcaaaagacgaacgcacctgtttgaacctcagagaaggctgagagatgaggat
cctataattccttttggtgaaggccctatcatctccaagtggggtgcaatttccaggtct
tcccgtacaggctatcacaccactgacccgatccaagctactgcttcccaaggaagtacc
acaaagccaatcaatttcagagactacggtccctatattaatcacagtgattccaggtgg
agcgcgtatgaatcggattcatcagctccttctaattatatgaaaagggatcagctacga
gtctcgggtcttactgctaaggattcttgtaacagagaccacttaagcacagagctacag
caggccgccagcaattctctgttacttcagaaagaagccaatgctttagccacgcagcag
aagtgggcatcactggaagatgagctttccttcagcctcataggcagtaaaatagctctc
agaaacacagagactggctttacagaagattcagtggactccaagccagatagagacatt
gaactggagctttcagctcttgatgctgatgaacccgatgctcaagatgaggaaatagag
gaggctctttcacaccagctgtgtatcaattctcacaatgataaacgttccaatggaact
gttgctggtaatggacaccagccgattcaacaagacagcattacatcagataaagtgggg
aatcatatactgaaacaaactgcaatcaataaaaaacaaagagttatccaacccatgacc
tggtgtttcagcaaggcgatgacccctgcaggtggagtcagctcctcggcttcagtcacg
tctgcgctcagcatcagcaaactggtcctgaaaacagcaacacagggagatctgactaaa
cccgccaccaatggagagatgctccttaatggaagctga

DBGET integrated database retrieval system