Polyodon spathula (Mississippi paddlefish): 121303732
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Entry
121303732 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121303732
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121303732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121303732
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121303732
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121303732
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121303732
U7-dependent histone pre-mRNA processing factors
121303732
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Radial_spoke
Symplekin_C
DUF4156
Motif
Other DBs
NCBI-GeneID:
121303732
NCBI-ProteinID:
XP_041090446
LinkDB
All DBs
Position
35:complement(504429..524309)
Genome browser
AA seq
1356 aa
AA seq
DB search
MIERRQGSPGTLQSGRTAGRLFQTSGVGGRKKVFRLADVIQPLSEAQVEKLTSMSVKRIL
QSEKAIARSGMSHVRVKILSRLVTQFEGSMKAEVLDFVLEDIRNRSDLAFALLYQEYNAY
LSDYPSGSLDSYDECLIGLLSGLQEKPDQRDGLFTKLVLEAPLITETALEVIRRYCEDET
RVYLGMTTLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRTHALTFIKRMYEKDQLRDYIE
KFALNYMQLLVHPNPPSMLFGADQDTEVAAPWSEDTVKQCLYLYLTLLPLSHKLIHELAS
VYTEAIADIKRTVLRVIEQPIRGMGMSSPELLLLVENCPKGAETLVTRCLHILTDKVPPS
QELVRRVRDLYQKRVPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQH
SEGSSTVSPLTPGELLISLHNIDSTRCDMKSIIKATNLCFGEKNVYTSEVLAVVMQHLME
QSPLPMLLMRTVIQSLTMYPRLSGFVMNILSRLIIKQVWKYPKVWEGFIKCCQRTKPQSF
AVLLQLPPPQLSSVFDKCPELRDPLLVHVRSFTPHQQAHIPRSVMTVLEANLKPDPEPPE
PKEHDEPEPPGGGGAPRATLPDVMAARLEQEKELKRQLEEEHQRVKGHPAEPGGTELEEA
MELREEGAANEDSALILDSSQEDPALGMKDNQTEAVNNEILEDSDKLILDQVEPMEEPLA
DSSPTTSQSQEAMEQGEGGDLPEDLYCNENPKKEKQMEEPEVLNNQRDLATSNAKAYLLK
NSTKSNMNLYDHLARVLNKILDERPENVVDMFEELSRDIKRSQFSKKMDTLRDEPESSAA
FDLAEIQKMLFGKGGAEGSEGQEEELVETPLPNVMELAFYFEQAGVGLSREETYCIYLAL
KQLVDSQPLQKCRFWGKILGTQGNYIVAEVEYREGEEEEEEGGEEGIHEAEKDYGKDDVE
DKERQEDLDPLPKSNYKPPPVVPKEDNHTGVNKFTYFVCSEPGKPWIKLPQLTPAHIVAA
REIKKFFTGHLDTPIVSCPPFPGNEAAYLRAQIARISAGTHISPLGFYHFGEEEGEEEEE
AVRDSFEENPDFEGTPVGELVHNSTWVHHVQHILPQGRCVWVNLAQKKEDDFEEGEEEEE
KEEEPDEPEPEVGPPLLTPVSEDAEINNTPPWTGRLSSDLIPQYAVAVMKSNLWPGAYAF
ATGKKFENIYLGWGHKYSAENYSPPAPALLQQEYPSGPEITEVDDPSVEEEQALKAALEE
QKAAMEEMEDMEEEEEEDDXPPQSPSSTTTTNQTDLPQSPSSTTTTNQTDLPQSPSSTTT
TNHQTDLPSHPAPPPPPIIRLTSPVTQLHHHHQSSD
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacgccggcagggcagtccaggtacactccaatccgggaggacagcggggcgt
ttatttcagacgtctggagtaggtgggcgcaagaaagtgtttcgattggctgatgtgatc
cagcccctgtcggaggctcaggttgagaagctgacaagcatgtcagtcaagcgcattctc
caatcggagaaggccatcgctcgcagtgggatgtcccatgtgcgtgtgaagatcctgtcc
cgtctggtcactcagttcgagggcagcatgaaggcggaggtgctggacttcgtgctggag
gacattcggaaccgcagcgacctggccttcgccctgctctaccaggagtacaacgcgtac
ttgagcgactacccctctggctccctggacagctacgacgagtgtctgatcggactgctg
tccgggctgcaggagaaacccgaccagagggatgggttgtttacaaagctggtgctggaa
gctccgctgataacagagacagccctggaagtgatccgcagatactgtgaggatgagacc
cgtgtgtatctggggatgaccacactgcgagacctgatcttcaagcgcccgtccaggcag
ttccagtacctgcacgtgctgttggacctcagctcccatgagaaggacaaggtgcgcaca
catgcactgaccttcattaagaggatgtacgagaaggaccagctgcgtgattacatcgag
aagtttgccctgaactacatgcagctgctcgtccaccccaaccctccgtcgatgctgttc
ggggccgaccaggatacagaggtggcagccccctggtcggaggacacggtgaagcagtgt
ctgtacctgtacctaactctcctccccctgagccacaaactgatccatgagctggcgtcg
gtctacacagaggccatcgctgacatcaagcgcactgtgctgcgggtcattgaacagcct
attcgcggcatggggatgagctctccggagctgctcctgctggttgagaactgtccgaag
ggggcggagacccttgtgacccgctgcctgcacatcctcactgataaagtccccccgtcc
caggagctggtgaggcgtgtgagggacctgtaccagaagagagtcccggatgtgcgcttc
ctcatcccagtgctcaacgggctggagaagaaagaagtgatccaggccttgcccaaacta
atcaagttaaacccaatcgtggttaaggaagtatttaacagactccttggcacacaacac
agtgaaggcagctcaacagtgtcccctttgaccccgggagagctcttgatatcactgcac
aacatcgactccaccaggtgtgacatgaagagtattataaaagccacaaacctgtgtttc
ggggagaagaacgtgtacacgtcagaggtgctggctgtggtgatgcagcacctgatggag
cagagcccgcttcccatgctgctgatgaggacggtcatccagtctctcaccatgtatccc
cggcttagcggcttcgtcatgaacatcctgtcccgcctcatcatcaagcaggtgtggaag
taccccaaggtttgggagggctttatcaagtgctgccagcggacgaagccccagtcgttt
gcagtgctgctgcagctcccccctccacagctcagcagtgttttcgacaaatgtccagag
ctgagggaccccctgctggtccacgtccgctccttcaccccacaccagcaagcccacatt
cccaggtccgtcatgactgtcctggaggcgaacctgaaaccggatccggaacctccagaa
cccaaggagcacgacgagccggagccccctggtggagggggggcaccccgggccacgctg
ccggacgtcatggcagctcggctggagcaggagaaagagctgaagaggcagctggaggag
gagcatcagcgagtgaaggggcatccagcagagccggggggcacagagctggaggaggca
atggagctgcgagaggagggggctgccaatgaggacagcgccctgattctcgactccagc
caggaggatcccgcactcggcatgaaggacaaccaaacagaagccgtaaacaatgaaatt
ctggaagacagtgacaaattaatccttgaccaagttgaaccaatggaagagccccttgca
gactctagtcccacaacctcccagtcgcaggaagccatggagcagggtgaaggaggagac
ttgccggaggacctctactgtaacgagaatccgaaaaaggagaaacaaatggaagaaccc
gaggtgctcaataaccagagggatctggcaacgagtaacgccaaggcgtacctgctgaag
aacagtacgaagtccaacatgaatctctatgaccacctggctcgggttctgaacaagatc
ctggatgagcgtccagagaacgtggtggacatgtttgaggagctcagcagggacatcaag
aggtctcagttctccaagaagatggacacccttcgcgacgagcccgagagctccgcagcc
ttcgatctcgctgagattcagaagatgctgttcggcaaggggggagccgagggatcagag
gggcaggaggaagagctggtagagaccccgctccccaacgtaatggagctggcgttctac
tttgagcaggctggggtaggtctcagtcgggaggagacgtactgtatctacctggctctc
aaacagctggtagacagccagcccttgcagaaatgtcgcttctgggggaagatcctgggc
acgcagggcaactacatagtggcagaagtggagtaccgagagggggaggaggaagaggag
gaggggggcgaggaaggcattcatgaggcagagaaagattatggaaaggatgatgttgag
gacaaagaaaggcaagaggacttagacccgctcccgaaatccaactacaaaccgccccct
gtcgtccccaaagaggacaaccacactggggtgaacaagttcacctactttgtctgcagt
gagcctgggaagccctggatcaagctgccgcagctgacaccagcacacatcgtagctgcc
agggaaatcaagaagttcttcacaggccacctggacaccccaattgtcagctgcccacct
ttccctggaaacgaggccgcctacctgcgggcgcagatcgcccggatctcagcgggcaca
cacatcagtccactggggttctaccacttcggagaggaggaaggtgaggaggaggaggag
gctgtgagggacagctttgaggagaatcccgattttgaggggacccccgttggtgagctg
gtgcataactcaacctgggtacaccacgtgcagcacatcctcccacagggccgctgtgtc
tgggtgaatctagcacagaagaaagaagatgattttgaagagggggaagaggaagaggag
aaggaggaagaaccagatgagcctgagcctgaggtgggacctcccctcctgacccccgtg
tctgaggacgcagaaatcaacaatacgcctccatggacaggaaggctctcttcggatctg
attccgcagtatgcagtagctgttatgaaatcaaacctctggccaggagcttatgctttt
gcaactggaaaaaagtttgaaaacatctacctgggatggggccacaagtacagcgctgag
aactacagcccccctgcacctgcgctgctgcagcaagagtacccgagtggccccgagatc
acggaggtggacgacccctctgtggaggaggagcaggctctcaaggcagcgctggaggag
cagaaggcagccatggaggagatggaggacatggaggaggaggaagaggaggatgactga
cctccccagtcacccagctccaccaccaccaccaatcagactgacctcccccagtcaccc
agctccaccaccaccaccaatcagactgacctcccccagtcacccagctccaccaccacc
accaatcatcagactgacctccccagtcacccagctccaccaccaccaccaatcatcaga
ctgacctccccagtcacccagctccaccaccaccaccaatcatcagactga
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integrated database retrieval system
