Polyodon spathula (Mississippi paddlefish): 121303749
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Entry
121303749 CDS
T07273
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121303749
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121303749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121303749
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121303749
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121303749
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121303749
U7-dependent histone pre-mRNA processing factors
121303749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Ty3_capsid
Motif
Other DBs
NCBI-GeneID:
121303749
NCBI-ProteinID:
XP_041090459
LinkDB
All DBs
Position
35:complement(2511513..2523700)
Genome browser
AA seq
538 aa
AA seq
DB search
MSAGGSEPGGGSSFRTSLASQFFTEEETTAIDMTTSEKVVDLLNQAALITSESKLTILKQ
VQELIINKDPSLLDNFLDEIIAFQTDKSMEVRKFVIGFIEEACKRDNELLLKLIANLNML
LKDESVNVVKKVILTMTHLYKVALQWMVRLKGISDIQEACWEMVTTMKDEIILMLDSEND
GIRTHAIKFVESLIIALSPRTSDSEVPKKQENDISLERIPKDHCYIRHNSLKQEGTMALE
QLLKFMVHPAISSINLTAALGSLATIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSV
RKNLKLHLLSVLKHASSFEFHGQITTLLLDLGTQQQEIARNMPNLKDVLKRQRDEAEPGL
KKIKTEPPLAEDDEDKDLDQAPVSLPKPSSAQGTQSAIDITAEFLLPLLNPENVANLVLI
SMVYLPDTMPASFQATYTPVESAGTDSQIKHLGRLMATQMTSAGIGPGVEQMKLAKEAPK
EEVELKPESVLIKRRVSALSMGQAISVLGAYSGKPEEEEQPLAKRRPEPILPTAQTNT
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagggggtagtgagcccggagggggcagcagcttcaggacaagcctggcctct
cagttcttcacggaggaggagaccaccgctatcgacatgacaacaagcgagaaggttgtg
gatttgttaaaccaggctgctctgataaccagcgaaagcaaactcacgatcctcaaacag
gttcaggagttgattataaacaaggacccatcactcctagacaacttcttagatgaaatc
attgctttccagactgataagtccatggaagttcgcaagtttgtcatcggattcattgag
gaagcctgtaaacgagacaacgagctgctgctgaagctgattgccaatctgaacatgttg
ctgaaagatgaaagtgtgaacgtggtgaagaaagtgattctcacaatgactcacctgtac
aaggttgcactgcagtggatggtgaggttgaaggggattagcgacatacaagaggcttgc
tgggagatggtgacgaccatgaaggatgaaatcatcttgatgctggactcggaaaacgac
gggattcgcacgcacgccatcaagtttgtggagagcctgatcatcgccctgtcgccgcgc
acctcagactccgaggtgcccaagaagcaggagaatgacatcagcctggagcgcataccc
aaggaccactgctacattcgacacaactcactgaaacaggaggggacgatggccctggag
cagctcctcaagttcatggtccacccggccatctccagcatcaacctgaccgctgcgctg
ggctccttggcaaccatcgctaggcaacggcccatgttcatgtcggaggtcatccaggcc
tacgaaacgctgcacgcaaacctgcccccgactctggccaagtcccaggtgagcagcgtg
cgaaagaacctgaagctgcatctgctgagcgtcctgaagcacgcgtcctccttcgagttc
cacgggcagatcaccacgctgctcctggacctgggcacgcagcagcaggagatcgcccgc
aacatgcccaacctcaaggacgtgctcaagcggcagcgcgatgaggccgagccaggcctc
aagaagatcaagacagagccccctctggcagaggatgatgaagataaagacctggatcag
gctccagtctcgttaccgaagccttcctcagctcagggcacccagtctgccatcgatatc
acagcggagttcctgctgcctctgctcaacccagagaacgtggccaacctggtgttgatc
agcatggtgtatctccctgacacgatgcctgcctctttccaagccacctacaccccagtg
gagtctgcaggcaccgactcgcagatcaaacatcttggccgtctcatggccacgcagatg
acctctgctggcatcgggccaggggtggagcagatgaagctggctaaggaagcgcccaag
gaggaggtggagctgaagcctgagagcgtgctgatcaagaggcgtgtgtcagcgctgtcc
atgggccaggccatctccgtgctgggagcctactccgggaagccagaggaggaagagcag
cctctcgccaagcgccgcccggaacccatcttacccaccgcccagaccaacacctga
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