Polyodon spathula (Mississippi paddlefish): 121303775
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Entry
121303775 CDS
T07273
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1-like
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121303775
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121303775
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
SALM family
121303775
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
121303775
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
Ig_3
LRR_4
ig
Ig_2
fn3
LRR_9
Ig_DSCAM-DSCAML_C
DC_STAMP
Sp38
C2-set_3
C2-set_2
GlyL_C
Motif
Other DBs
NCBI-GeneID:
121303775
NCBI-ProteinID:
XP_041090486
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Position
35:3946238..4018342
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AA seq
762 aa
AA seq
DB search
MERIVFCVLMFGVLVKAHNCPGRCICQNISPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITVIRRKDFLNMTSLVHLTLSRNTISQIMPHAFMDLRALRALHMDGNRLNSLKNEHFK
GLGNLRHLILGNNQIHHVASATFDEFLGTIEDLDISYNNLETLPWEAIARMTNINTLTLD
HNLIDHIEEGTFSLLHKLVRLDMTSNRLHKLPPDTLFLRAEVLANAEVSNPSTLTVSFGG
NPLHCNCELLWLRRLTREDDLETCASPVALMDKYFWSIQEEEFICEPPLITRHHASKAYV
MEGQGVTLKCKAIGDPDPSIHWISPDGKLIHNTSRTVLFDNGTLDIFITTLKDSGSFSCI
ASNAAGEATAPVEVNIVPLPLFVNNTSHMKEPDPGLSDITTSSKSSSNDTKNQDKKVVVG
ELTSSSVVIWWPSERHIPGIRMYQIQYNSTSDDTLVYRMIPSTSKTFLVNDLAGGREYDL
CVLAVYDDGITSLTATRVVGCVQFSTASENSQCKFIHSQFLGGTMIIIIGGIIVASVLVF
IIILMIRYKVYNNQDDHTSAKVSNVYSQTSGNLAVMHRSSSKQAEEKNEIWAKEAANKDC
KALVLKVDCEKSEAPQPTTTVITEVQLSLVPIERRRTLTSVDLQQAAAILSSEDAQTDSS
IVGSTISLCLIGSSNGNKDAPKRRDKKSALGSNTLLPSNIARTRHRFSFDGDYSLFQSNS
YPRRARTRRHMSSTQINVDVASPLGNRRVIFSSTEWMLESTV
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggattgtcttctgcgtgttgatgtttggcgtgttggtgaaggctcataactgc
cctggtcgctgcatctgccagaatatctcccctaccctgactttgctctgtgccaaaacg
ggactcctgtttgtgccgcctaccatcgaccgcaaaaccgtggagctacgcttgacggac
aacttcatcaccgttatacggaggaaggactttctcaacatgaccagcctggttcatctc
accctgtctaggaacaccatcagtcagatcatgcctcatgctttcatggacttgagagcc
ctccgcgccttgcacatggatggcaaccggctcaactccctgaagaacgagcacttcaag
ggtctcggcaacctgcgtcacctcattttagggaacaaccagatccaccatgtggcttcc
gccacgtttgatgagtttcttgggaccattgaagacttggatatctcgtacaacaaccta
gagaccctcccttgggaggctattgccaggatgaccaacatcaacaccctcacgttggat
cacaatctgatagatcacattgaagaagggaccttttccttgcttcacaagctggtcagg
cttgacatgacttcgaaccggctgcacaagctgccgccagacaccctcttcctgcgcgct
gaagtcttggccaacgctgaggtgtccaatccttccacattgacagtcagctttggtggg
aaccccttacactgtaactgtgagttactttggctcaggaggcttaccagggaagatgac
ttggagacatgtgcttcccccgtcgcccttatggataaatacttctggtccatccaagag
gaggagttcatctgtgaacctccattgatcactagacaccacgcctctaaagcctatgtc
atggaagggcaaggggtgaccttgaagtgcaaagctattggagatccagacccttccatc
cattggatctctcccgatgggaaactcattcacaacacctctaggaccgtcctcttcgac
aacgggactttggacatcttcatcaccacccttaaggatagtgggtctttcagctgcatc
gcctccaacgctgccggggaagcaactgcccccgtcgaggtcaacattgttcccttgccc
cttttcgtcaacaacaccagccacatgaaggagcccgaccctggcttgtccgacatcacc
acctcgtccaaatcaagctccaatgataccaagaaccaagacaagaaggtggtggtcgga
gagctgacctcatcttctgtcgtcatctggtggccttctgagcgtcacatccctggcatc
cgcatgtatcagatccaatacaacagcacctctgatgacacattggtttacaggatgatt
ccatcaactagcaagaccttcctagtgaatgacttagcaggaggtcgggaatatgacctc
tgtgtcctagctgtctatgacgacgggatcacctctctgacggccaccagagtggtgggc
tgtgtccagttctccacagccagcgagaacagccagtgcaagttcatccacagtcagttc
cttggaggaaccatgatcatcatcattggaggcatcatagtggcttcagtcctggtcttc
atcatcattctgatgatccgttacaaggtctacaacaaccaagacgaccacacctcagcc
aaagtgagcaacgtctactcccagaccagcggaaacctagctgtcatgcatcgttcctcc
tccaagcaagcagaggagaagaatgagatctgggctaaggaggccgccaacaaagactgc
aaggctctggtcttgaaagtggattgcgagaaatcagaggctccccagcccaccaccact
gtcatcactgaggtccagctgtctctggttccaatagaaaggaggcggaccctgaccagt
gtagacctccagcaagcagcagctatcctgtcttcagaggatgcccagacggacagcagc
atagtgggttccaccatatcactctgcttgataggttcctccaacggcaacaaagatgca
cccaagcgtagggataaaaagagtgccttgggtagcaatactctccttcccagcaacatt
gcaagaactcggcacaggttctcctttgacggggactactcgttgtttcagagtaacagt
taccccagaagggcaaggacaaggagacacatgtcctctacccagataaacgtggacgtg
gcttctcctttgggaaaccggagggtgatctttagcagcacagagtggatgttggaaagc
acggtttga
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