Polyodon spathula (Mississippi paddlefish): 121303784
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Entry
121303784 CDS
T07273
Name
(RefSeq) alpha-actinin-4
KO
K05699
actinin alpha 1/4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04520
Adherens junction
pspa04530
Tight junction
pspa04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121303784
04520 Adherens junction
121303784
04530 Tight junction
121303784
09142 Cell motility
04810 Regulation of actin cytoskeleton
121303784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121303784
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121303784
04147 Exosome [BR:
pspa04147
]
121303784
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121303784
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121303784
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121303784
Exosomal proteins of colorectal cancer cells
121303784
Exosomal proteins of bladder cancer cells
121303784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_1
EF-hand_7
EF-hand_6
EF-hand_8
EF-hand_5
Uds1
Motif
Other DBs
NCBI-GeneID:
121303784
NCBI-ProteinID:
XP_041090498
LinkDB
All DBs
Position
35:complement(5631635..5658097)
Genome browser
AA seq
900 aa
AA seq
DB search
MVDYHATNSQQSPPGSGQTHMEQPDEWDRDLLLDPAWERQQRKTFTAWCNSHLRKSGTQI
SNIEEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGA
EEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHIS
WKDGLAFNALIHRHRPELIDYDKLRKDDPIANLNNAFEVAEKYLDIPKMLDAEDIVGTVR
PDEKAVMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENENLMEDYEKLASDLLEWIRA
TIPWLENRAPEKTMQEMQLKLEDFRGYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNRPA
FMPSEGRMVSDVNNAWHGLEHAEKGYEEWLLNEIRRLERLDHLAEKFRQKATIHEAWTEG
NEAMLTKKDYETATLSDIKALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSV
NARCQKICDQWDVLGSLTQSRREALERTEKQLESIDELYLEYAKRAAPFNNWMEGAMEDL
QDMFIVHNIEEIQGLLSAHEQFKATLSDADKERESIQGIHSEVQKIAQYNNIKLTGGNPY
TTVTPQTVNDKWDKVQQLVPQRDRALQEELARQQSNERLRRQFANHANVVGPWIQNKMEE
IGRISIEMNGTLEDQLNHLKQYERSIIEYKPNIDQLEGDHQLIQEALIFDNKDTSYSMEH
LRVGWEQLLTTIARTINEIENQILTRDAKGISQEQLHEFRASFNHFDKDHSGALGQEEFK
ACLISLGYNVENNKQGDAEFARIMSVVDPNHSGVVTFQAFIDFMSKETTDTDTADQVVAS
FKILAGDKNFITAAELRRELPPDQAEYCIARMAPYRGPDAIPGALDYMSFSTALYGESDL
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggtggattatcacgccacgaacagccagcagtcgccccccggctcaggccagacccac
atggagcagcccgacgagtgggaccgggacctgctcctggatcccgcctgggagcggcag
cagcgcaagacgttcacagcctggtgtaactctcacttgcggaagtcaggaacgcagatc
agcaatattgaggaggatttcagagacgggctcaaactcatgctgctgctggaggtcata
tcaggcgaacgtttacccaaacctgagcgaggaaagatgagggtccacaagatcaacaac
gtcaacaaagcgctggacttcatcgccagcaaaggagtcaaactggtttccatcggagcc
gaggagatcgtggatgggaatgctaagatgaccctggggatgatctggaccatcatcttg
cgcttcgcaatccaggacatctccgtcgaagaaacctctgctaaggagggactgctgctc
tggtgccagcgcaagacagccccctacaagaacgtcaacgtgcagaacttccacatcagc
tggaaggacggtcttgctttcaacgccctgattcacagacacaggcccgagctgatcgac
tatgacaagctgaggaaggacgaccccatcgctaacctgaacaacgccttcgaggtggct
gagaaatacctcgacatccccaagatgctggacgctgaagacatcgtgggcacggtcagg
cctgacgagaaagcagtcatgacttatgtctcctccttctatcacgccttctctggggcg
cagaaggctgagacggcagccaatcggatctgcaaggtgctggcggtgaaccaggagaac
gagaatctcatggaggactacgagaagctggccagcgacctcctggagtggatccgggcc
acgatcccctggctggagaatcgcgcccccgagaagacgatgcaggagatgcagctgaag
ctggaggattttcgagggtaccggcgggtacacaagccccccaaggtgcaggagaagtgc
cagctggagatcaacttcaacaccctgcaaaccaagctgagactgagcaaccggcctgct
ttcatgccctccgaggggcgcatggtctcggacgtcaataacgcttggcacggtctggag
cacgcggagaagggctatgaggagtggctgctgaacgagatccgcagactggagagactc
gaccacctggcagagaaattcagacagaaagccaccatccacgaggcgtggaccgagggt
aatgaggccatgctgaccaagaaggactatgagacggcaacgctgtctgacatcaaagcc
ctgctgcgcaaacacgaggccttcgagagcgacctcgcagcgcaccaggacagagtggag
cagatcgctgccatcgcgcaggagctcaacgagctggattactacgactctcccagcgtg
aacgctcgctgccagaagatctgcgaccagtgggatgtactgggatccctgacccagagc
cgcagggaggccctggagaggacagagaagcagctggagtcgatcgatgagctgtacctc
gagtacgccaagagggcggcgcccttcaacaactggatggagggggcgatggaggacctg
caggacatgttcatcgtgcacaacatcgaggagatccagggtctgctctccgctcatgag
cagttcaaggccactctctccgatgctgataaggagcgcgagtcaatccaggggattcac
agcgaggttcagaagatcgcccagtacaacaacatcaagctgactggaggcaacccctac
accaccgtcaccccccagactgtcaacgacaagtgggacaaagtacagcagctcgttcct
cagagggaccgtgctctgcaggaggagttggcgcggcagcaatccaacgagcggctgagg
cgccagtttgccaatcatgccaacgtggtgggaccctggatccagaataagatggaggag
atcgggcgcatctcgattgagatgaacggcacgctggaggatcagctgaatcacctgaag
cagtacgagcgaagcatcatcgagtacaaacccaacatcgaccagctggagggagaccac
cagctcatccaggaggcgctgatcttcgacaacaaggacaccagctacagcatggagcac
ctgagagtgggctgggagcagctcctcaccaccatcgcccgcaccatcaacgagatcgag
aaccagatcctgacgagagacgccaaggggatcagccaggagcagctgcacgagttcaga
gcctccttcaaccacttcgacaaggatcacagcggtgcgctgggacaggaagagttcaag
gcctgcctcatcagcctgggctacaatgtggagaacaacaagcagggtgacgcagagttc
gctcgcatcatgagcgtcgtcgaccccaaccacagcggggtcgtgaccttccaggccttc
attgacttcatgtccaaagagacgaccgacacagacactgctgatcaggtggtggcgtcc
ttcaagatcctggcaggagacaagaacttcatcaccgcggccgagctgcgcagggagctg
cccccggaccaggccgagtactgcatcgcccgcatggctccctaccgggggcccgacgcc
atccccggggccctcgactacatgagcttctccacagcgctgtacggggagagcgacctg
tag
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integrated database retrieval system
